Pairwise Alignments

Query, 617 a.a., protein translocase subunit SecD from Vibrio cholerae E7946 ATCC 55056

Subject, 611 a.a., protein-export membrane protein SecD (RefSeq) from Shewanella amazonensis SB2B

 Score =  451 bits (1159), Expect = e-131
 Identities = 264/613 (43%), Positives = 388/613 (63%), Gaps = 35/613 (5%)

Query: 2   LNRYPLWKYLMVMLTIAVAALYALPNIYGEDPAIQITGARGASVDMSTLDAVTDALNKAQ 61
           LNR   W  L   + + + AL ALP+ +GE  A+ +      + + +        L +A 
Sbjct: 19  LNRTSPWLALTFSVALILLALSALPSFFGERAALTLGKDAWIAPEQAG-----QILTEAH 73

Query: 62  LSQKSIALENGSILVRFNDTDTQISARDIISEALGKDKIVALNLAPSTPYWLESIGAAPM 121
           +   +I+  +  I +  +D + Q++AR +++EA      + L++ P+ P WL  +G +P+
Sbjct: 74  IGVAAISARDKGIQIILSDENQQMAARQLLAEAAQNPAAITLSMVPAAPPWLNRLGLSPI 133

Query: 122 KLGLDLRGGVHFLMEVDMDAAMEKLVSQQEEAFRSDLRDEKIRYRAIRPLSDAVEVTLR- 180
           KLGLDLRGGV FLM+VD     +      + A R  +RD+ +R  A+  L D   +T   
Sbjct: 134 KLGLDLRGGVQFLMQVDTAPVFKAQGEALKGAIRQVIRDKGLRSVAV--LKDESRLTENP 191

Query: 181 DAEQLA-QTKLLLESKHRDMT----FTTSESDGRFVLVAKFTEARLQEIRNYAVEQNITI 235
           DA +L+  T+ L E +   +     + +  +DG  +L  K TE     + +  +++NI+I
Sbjct: 192 DALKLSGATQSLAELRGWLLLNYPQWQSESADGAILLRLKDTER--VALVSQTLKENISI 249

Query: 236 LRNRVNELGVAEPLVQRQGATRIVVELPGVQDTARAKEILGATATLEFREVDDKADLAAA 295
           +R R+ ELG+ E +VQR G +RI+VELPGVQD   AK ++GATA+L F E+ +       
Sbjct: 250 MRGRIQELGITEAIVQRHGESRILVELPGVQDPVAAKRVIGATASLSFHELKE-----GG 304

Query: 296 AAGRAPAGSEIKFDRNGRPVVLKKRVILGGSSITDASSSADEYGRPQVNISLDSEGGNKM 355
            A + P G       +GR V L    +LGG  I DA S +DE GRP VNI LD+EGG +M
Sbjct: 305 TALQTPFG-------DGR-VGLNPAPVLGGEHIVDARSGSDEMGRPAVNIVLDTEGGKRM 356

Query: 356 SAFSKKNIGKLMATVFAEYKDSGKRSPEGKVILTKHEEVINQATIQSALGRNFRITGIDS 415
           S FS+ +IG+ MAT ++EY+ S     EG V   K   VI+ ATI S LG  F ITG+ S
Sbjct: 357 SDFSRGHIGEPMATRYSEYRASA----EGTV---KDSRVISVATINSQLGNRFSITGLGS 409

Query: 416 PAEAHNLALLLRAGALIAPISIVEERTIGPSMGQQNIDMGIQACIWGMVAVMLFTVLYYR 475
             EA  LA+LLRAG++ AP++I +ERTIGPS+G +NI  G  A   GM A +LF  L+YR
Sbjct: 410 HEEAQELAMLLRAGSMTAPVTIQKERTIGPSLGAENIHNGFAALALGMGATLLFMALWYR 469

Query: 476 KFGMIANIALMANLVLIIGVMSMIPGATMTLPGIAGIVLTVGMAVDANVLIFERIREELR 535
           + G +AN+AL+ANLV+++G++++IPGA +TLPGIAG+VLTVGMAVD NVLIFERIR++++
Sbjct: 470 RLGWVANVALLANLVMLLGLLALIPGAVLTLPGIAGLVLTVGMAVDTNVLIFERIRDKMK 529

Query: 536 EGKNPQQAIHQGYANAFSTIADANITTLITAIILFAVGTGAIKGFAVTLSIGILTSMFTA 595
           EG++   AI +G+A+AF TI DAN+TT+ITA++L+A+G G I+GFA+TL +G++TSM T 
Sbjct: 530 EGRSLALAIDKGFASAFGTIVDANLTTMITALVLYAIGNGPIQGFALTLGLGLVTSMITG 589

Query: 596 IVGTRCIVNLLYG 608
           I  +R I+N +YG
Sbjct: 590 IFMSRLIINWVYG 602