Pairwise Alignments

Query, 617 a.a., protein translocase subunit SecD from Vibrio cholerae E7946 ATCC 55056

Subject, 616 a.a., preprotein translocase subunit SecD (RefSeq) from Shewanella amazonensis SB2B

 Score =  751 bits (1939), Expect = 0.0
 Identities = 389/617 (63%), Positives = 479/617 (77%), Gaps = 1/617 (0%)

Query: 1   MLNRYPLWKYLMVMLTIAVAALYALPNIYGEDPAIQITGARGASVDMSTLDAVTDALNKA 60
           MLN+YP+WK +MV+L IA+   YALPN++GED A+Q+   RGA V  +T   V+ AL   
Sbjct: 1   MLNKYPMWKNIMVVLVIAIGGFYALPNLFGEDHAVQVVATRGADVTATTQSDVSAALTAK 60

Query: 61  QLSQKSIALENGSILVRFNDTDTQISARDIISEALGKDKIVALNLAPSTPYWLESIGAAP 120
            +  K   LENG +LVR  + + Q++A++ I+E LG    VALNLAP+TP WLES+G +P
Sbjct: 61  GIGIKRSELENGQLLVRVANAEDQLTAKETIAELLGDKYTVALNLAPATPEWLESVGGSP 120

Query: 121 MKLGLDLRGGVHFLMEVDMDAAMEKLVSQQEEAFRSDLRDEKIRYRAIRPLSDAVEVTLR 180
           MKLGLDLRGGVHFLMEVDM  A+ K+   +   FRS LR+E+IRY  +      +E+  R
Sbjct: 121 MKLGLDLRGGVHFLMEVDMSEAIRKMEEAKIADFRSQLREERIRYAGVHRTVRGIEIKFR 180

Query: 181 DAEQLAQTKLLLESKHRDMTFTTSESDGRFVLVAKFTEARLQEIRNYAVEQNITILRNRV 240
           DAE L+Q +  L+S+  DM F+   S    VL+A  +EA L++I+  A+ QNIT +RNRV
Sbjct: 181 DAETLSQAERFLKSRGNDMVFSDISSGDNVVLLAVMSEAYLKQIKEEALLQNITTIRNRV 240

Query: 241 NELGVAEPLVQRQGATRIVVELPGVQDTARAKEILGATATLEFREVDDKADLAAAAAGRA 300
           NELGVAEP+VQRQGA RI+VELPGVQDTARAKEILGATA++EF  VD+KAD+AAAA GR 
Sbjct: 241 NELGVAEPVVQRQGAERIIVELPGVQDTARAKEILGATASIEFHMVDEKADVAAAANGRV 300

Query: 301 PAGSEIKFDRNGRPVVLKKRVILGGSSITDASSSADEYGRPQVNISLDSEGGNKMSAFSK 360
           PAGSE+   R G PVVLKK V+L G  IT A  S DEY RPQV I LD++GG   S  +K
Sbjct: 301 PAGSELYQRREGGPVVLKKEVMLTGDHITGAQPSFDEYSRPQVAIQLDAKGGEIFSNVTK 360

Query: 361 KNIGKLMATVFAEYKDSGKRSPEGKVILTKHEEVINQATIQSALGRNFRITGIDSPAEAH 420
            NIGK MAT+F EYKDSG+R+P+G V + K EEVI+ ATIQ+ LGRNF ITG+ + +E+ 
Sbjct: 361 DNIGKPMATLFIEYKDSGERNPDGSVKMRKIEEVISVATIQARLGRNFVITGL-THSESQ 419

Query: 421 NLALLLRAGALIAPISIVEERTIGPSMGQQNIDMGIQACIWGMVAVMLFTVLYYRKFGMI 480
           NLALLLRAGALIAP+SIVEERTIGPS+G +NI+ G+QA IWGMV V+ F ++YYR FG+I
Sbjct: 420 NLALLLRAGALIAPVSIVEERTIGPSLGAENIENGLQAMIWGMVVVLAFMLVYYRAFGVI 479

Query: 481 ANIALMANLVLIIGVMSMIPGATMTLPGIAGIVLTVGMAVDANVLIFERIREELREGKNP 540
           AN+AL ANL++++GVMSMIPGA +TLPGIAG+VLTVGMAVD NVLI+ERIREELR G++ 
Sbjct: 480 ANLALCANLIMVVGVMSMIPGAVLTLPGIAGMVLTVGMAVDGNVLIYERIREELRAGRSV 539

Query: 541 QQAIHQGYANAFSTIADANITTLITAIILFAVGTGAIKGFAVTLSIGILTSMFTAIVGTR 600
           QQAIH+GY NA STIADANITT +TA+ILFAVGTGA+KGFAVTL IGI TSMFTAIVGTR
Sbjct: 540 QQAIHEGYGNALSTIADANITTFLTALILFAVGTGAVKGFAVTLMIGIATSMFTAIVGTR 599

Query: 601 CIVNLLYGGKRINKLSI 617
            IVN L+GGKR+ KLSI
Sbjct: 600 AIVNALWGGKRVKKLSI 616