Pairwise Alignments

Query, 617 a.a., protein translocase subunit SecD from Vibrio cholerae E7946 ATCC 55056

Subject, 853 a.a., SecD export membrane protein (NCBI) from Rhodospirillum rubrum S1H

 Score =  315 bits (806), Expect = 7e-90
 Identities = 195/510 (38%), Positives = 294/510 (57%), Gaps = 45/510 (8%)

Query: 108 STPYWLESIGAAPMKLGLDLRGGVHFLMEVDMDAAMEKLVSQQEEAFRSDLRDEKIRYRA 167
           S P WL       + LGLDL+GG H L+ VDM A +   +    E+ R++LR + +RY  
Sbjct: 32  SLPDWLPQ---NRITLGLDLQGGSHLLLAVDMPAVIHDRLETMLESVRTNLRKDSLRYTG 88

Query: 168 IRPLSDAVEVTLRDAEQLAQTKLLLE--------SKHRDMTFTTSESDGRFVLVAKFTEA 219
           +     +V  TL  A+ +   +  L          K  D   T     GR  L     ++
Sbjct: 89  LAVRDRSVVFTLASADDIETARGALAPLVQPDEPGKPADYGLTFDGLTGRIALA----DS 144

Query: 220 RLQEIRNYAVEQNITILRNRVNELGVAEPLVQRQGATRIVVELPGVQDTARAKEILGATA 279
            +Q   + A +Q+I I+R R++E GV EP++ RQGA RI+V+LPGV D  R K +LG TA
Sbjct: 145 GVQAWADKAAQQSIEIVRRRIDETGVNEPMIARQGADRILVQLPGVSDPGRIKRLLGQTA 204

Query: 280 TLEFREVDDKADLAAAAAGRAPAGSEIKFD----RNGRPVVLKKRVILGGSSITDASSSA 335
            + F  V D+A       G  PAG  +       R G  +++ ++V + GS +TDA  S 
Sbjct: 205 KMTFHMVGDRA----LGDGSVPAGYRLLPSADPARPGEKILVSRKVEVDGSHLTDAKPSF 260

Query: 336 DEY-GRPQVNISLDSEGGNKMSAFSKKNIGKLMATVFAEYKDSGKRSPEGKVILTKHEEV 394
           D+  G+  V+ S D +G  + +  +K  +GK  A V                     ++V
Sbjct: 261 DQQNGQWVVSFSFDGQGARRFADVTKMAVGKPFAIVL-------------------DDKV 301

Query: 395 INQATIQSAL-GRNFRITGIDSPAEAHNLALLLRAGALIAPISIVEERTIGPSMGQQNID 453
           ++   I+  + G   +I+G  + A A++LA+LLRAGAL AP+++VEERT+GP +G  +I 
Sbjct: 302 VSAPVIREPITGGRGQISGSFTAASANDLAVLLRAGALPAPLTVVEERTVGPDLGADSIR 361

Query: 454 MGIQACIWGMVAVMLFTVLYYRKFGMIANIALMANLVLIIGVMSMIPGATMTLPGIAGIV 513
            G+ A   G V V+ +  ++Y  FG  AN+AL+ NL + +G +S++  AT+TLPGIAG++
Sbjct: 362 AGMIAISVGFVLVVAYMGIFYGLFGWFANVALVFNLAITLGALSLMQ-ATLTLPGIAGLL 420

Query: 514 LTVGMAVDANVLIFERIREELREGKNPQQAIHQGYANAFSTIADANITTLITAIILFAVG 573
           L++GMAVDAN+LI ERIREE ++G+    ++  G+  AF+TI D+NITTLI   ILF++G
Sbjct: 421 LSLGMAVDANILINERIREEAKKGRGVAASMETGFKRAFATIFDSNITTLIKMAILFSIG 480

Query: 574 TGAIKGFAVTLSIGILTSMFTAIVGTRCIV 603
            G I+GFAVT+S+GI+ SMFTAI  TR ++
Sbjct: 481 VGTIRGFAVTISLGIIVSMFTAITVTRLLM 510