Pairwise Alignments

Query, 617 a.a., protein translocase subunit SecD from Vibrio cholerae E7946 ATCC 55056

Subject, 488 a.a., SecD export membrane protein (NCBI) from Rhodospirillum rubrum S1H

 Score =  229 bits (583), Expect = 3e-64
 Identities = 169/488 (34%), Positives = 249/488 (51%), Gaps = 55/488 (11%)

Query: 120 PMKLGLDLRGGVHFLMEVDMDAAMEKLVSQQEEAFRSDLRDEKIRYRAIRPLSDAVEVTL 179
           P+ LGLDL+GG  FL+++D  A + +       +  + LR E+I   A      AV V +
Sbjct: 42  PLSLGLDLKGGSTFLIDLDAPALVHETQVALAASAGAALRGERIGGAANLGEDGAVVVDI 101

Query: 180 RDAEQLAQTKLLLESKHRDMTFTTSESDGRFVLVAKFTEARLQEIRNYAVEQNITILRNR 239
            DA Q A    LL         T +E      +   FT     E  +  V + + +LR R
Sbjct: 102 ADAGQRAAALRLLRGLEAG---TEAEITPAGAIRLTFTAIAQAERTDRMVARGLGVLRQR 158

Query: 240 VNELGVAEPLVQRQGATRIVVELPGVQDTARAKEILGATATLEFREVDDKADLAAAAAGR 299
           + E G++E  ++R+   RI+V LPG+ D+ R +++L   A L  R          AA G 
Sbjct: 159 LREAGLSEIRLERRSDRRILVALPGLDDSERVRDLLWRPARLSIR----------AANGE 208

Query: 300 APAGSEIKFDRNGRPVVLKKRVILGGSSITDASSSADEYGRPQVNISLDSEGGNKMSAFS 359
              G  I  DR                 +T A ++    G+P +++  D  G  ++    
Sbjct: 209 ---GGTIDGDR-----------------LTSAQATVQN-GKPLISLRFDGVGERRIIQMR 247

Query: 360 KKNIGK--LMATVFAEYKDSGKRSPEGKVILTKHEEVINQATIQSALGRNFRITGIDSPA 417
               G+  L AT+            +G+ +  +   ++ Q     + G    + G  S  
Sbjct: 248 GGEGGERGLEATI------------DGEAVAVR---LLRQP---GSGGIGLLLDGAFSTR 289

Query: 418 EAHNLALLLRAGALIAPISIVEERTIGPSMGQQNIDMGIQACIWGMVAVMLFTVLYYRKF 477
            A +LAL+LR GAL  P  IVEERT+GPS+G   +  G  A   G +AV +F +  Y  F
Sbjct: 290 AAQDLALMLRVGALPTPFRIVEERTVGPSLGADRVAAGALASAAGALAVTVFLIAVYGLF 349

Query: 478 GMIANIALMANLVLIIGVMSMIPGATMTLPGIAGIVLTVGMAVDANVLIFERIREELREG 537
           G+ A IAL  N  L+ G++S + GAT+TLPGIAGI LT+GMAVDA+VLIFERI EE R G
Sbjct: 350 GVFATIALGLNFCLLFGMLSGL-GATLTLPGIAGIALTIGMAVDASVLIFERIGEEARAG 408

Query: 538 KNPQQAIHQGYANAFSTIADANITTLITAIILFAVGTGAIKGFAVTLSIGILTSMFTAIV 597
               +A+  G+  AFS + DANI TL    +LF +G G ++GFAVTL++G ++++FTA++
Sbjct: 409 LAVDEALRAGFGKAFSAVLDANILTLGVGALLFWLGGGPVRGFAVTLTLGAVSALFTAML 468

Query: 598 GTRCIVNL 605
             R IV L
Sbjct: 469 LNRLIVAL 476