Pairwise Alignments

Query, 617 a.a., protein translocase subunit SecD from Vibrio cholerae E7946 ATCC 55056

Subject, 533 a.a., protein translocase subunit SecD from Rhodopseudomonas palustris CGA009

 Score =  344 bits (883), Expect = 5e-99
 Identities = 209/524 (39%), Positives = 307/524 (58%), Gaps = 39/524 (7%)

Query: 108 STPYWLESIGAAPMKLGLDLRGGVHFLMEVDMDAAMEKLVSQQEEAFRSDLRDEKIRYRA 167
           S P W +      + LGLDL+GG H L+EVD ++  +  +    +  R  LR+ +I Y  
Sbjct: 35  SWPKWAQR----HLVLGLDLQGGSHILLEVDANSVKKDKLDSVRDDARRVLREARIAYTG 90

Query: 168 IRPLSDAVEV----------TLRDAEQLAQTKLLLESKHRDMTFTTSESDGRFVLVAKFT 217
           +    D+VEV           L    +L+Q    L   +   +   S++ G  + +    
Sbjct: 91  LATKGDSVEVRISKDTDVPVALAKLRELSQPLGGLLGSNGQRSLEVSDAGGGLIRLTVPQ 150

Query: 218 EARLQEIRNYAVEQNITILRNRVNELGVAEPLVQRQGATRIVVELPGVQDTARAKEILGA 277
            A    +R  +V+Q+I I+  RVNELG  EPL+QRQGA RI+V++PG+QD  R KE+LG 
Sbjct: 151 AAIADRVRQ-SVDQSIQIVERRVNELGTVEPLIQRQGADRILVQVPGLQDPTRLKELLGK 209

Query: 278 TATLEFREVDDKADLAAAAAGRAPAGSEIKFDRNG--RPVVLKKRVILGGSSITDASSSA 335
           TA L+FR VD       A  G  P  SE+    +   +P V+KK+V++ G+ +TDA    
Sbjct: 210 TAKLDFRMVDSSVSGDQAMGGNVPPDSELLMSASSPKQPYVIKKQVLVSGADLTDAQPGF 269

Query: 336 DEY-GRPQVNISLDSEGGNKMSAFSKKNIGKLMATVFAEYKDSGKRSPEGKVILTKHEEV 394
           D+  G P V+   ++ G  K +  + +N+G   A V                      EV
Sbjct: 270 DQRTGEPIVSFRFNTNGARKFARATTENVGLPFAIVL-------------------DNEV 310

Query: 395 INQATIQSAL-GRNFRITGIDSPAEAHNLALLLRAGALIAPISIVEERTIGPSMGQQNID 453
           I+   I+  + G + +I+G  +   A++LA+LLRAGAL AP++I+EERT+GP +GQ +I+
Sbjct: 311 ISAPVIREPITGGSGQISGSFTVQGANDLAILLRAGALPAPLTIIEERTVGPGLGQDSIE 370

Query: 454 MGIQACIWGMVAVMLFTVLYYRKFGMIANIALMANLVLIIGVMSMIPGATMTLPGIAGIV 513
            G +A   G + V++F +L YR FG+ AN+A+  N+ +I GV+S++  AT+TLPGIAGIV
Sbjct: 371 KGERAAYVGSILVIVFMLLTYRLFGVFANLAVAVNVAMIFGVLSLL-NATLTLPGIAGIV 429

Query: 514 LTVGMAVDANVLIFERIREELREGKNPQQAIHQGYANAFSTIADANITTLITAIILFAVG 573
           LTVG+AVD+NVLI+ERIREE+R G+N   AI  G+  A +TI D+NITT I A +LF +G
Sbjct: 430 LTVGIAVDSNVLIYERIREEIRAGRNAISAIDAGFKRALATILDSNITTFIAAAVLFYIG 489

Query: 574 TGAIKGFAVTLSIGILTSMFTAIVGTRCIVNLLYGGKRINKLSI 617
           TG ++GFAVTL IGI+T++FTA   TR IV      KR + + I
Sbjct: 490 TGPVRGFAVTLGIGIITTVFTAFTLTRLIVATWVRWKRPHHVPI 533



 Score = 30.4 bits (67), Expect = 2e-04
 Identities = 29/117 (24%), Positives = 49/117 (41%), Gaps = 28/117 (23%)

Query: 8   WKYLMVMLTIAVAALYALPNIYGEDP--------------AIQITGAR-------GASVD 46
           WK L ++LT     L A+PN + E                 + + G           SV 
Sbjct: 7   WKALAIILTALAVCLCAVPNFFPESTVKSWPKWAQRHLVLGLDLQGGSHILLEVDANSVK 66

Query: 47  MSTLDAVTD----ALNKAQLSQKSIALENGSILVRFN-DTDTQISARDI--ISEALG 96
              LD+V D     L +A+++   +A +  S+ VR + DTD  ++   +  +S+ LG
Sbjct: 67  KDKLDSVRDDARRVLREARIAYTGLATKGDSVEVRISKDTDVPVALAKLRELSQPLG 123