Pairwise Alignments

Query, 617 a.a., protein translocase subunit SecD from Vibrio cholerae E7946 ATCC 55056

Subject, 553 a.a., protein-export membrane protein SecD from Phaeobacter inhibens DSM 17395

 Score =  329 bits (843), Expect = 2e-94
 Identities = 212/546 (38%), Positives = 311/546 (56%), Gaps = 42/546 (7%)

Query: 87  ARDIISEALGKDKIVA-LNLAPSTPYWLESIGAAPMKLGLDLRGGVHFLMEVDM----DA 141
           A D  +E + K +  A L++A   P ++ S   + + LGLDLRGG H L EV +     A
Sbjct: 35  ANDAAAEIITKGESPARLDVAGQWPSFMPS---SLVNLGLDLRGGAHLLAEVKVADVYGA 91

Query: 142 AMEKLVSQQEEAFRSDLRDEKIRYRAIRPLSDAVEVTLRDAEQLAQTKLLLESKHRDMTF 201
            M+ L  +  +A R + R E   +R  +     + + +   E +A+   ++      +T 
Sbjct: 92  RMDALWPEVRDALRPE-RGEVGTFRRQQAPEGQIRLKISKPEGMARALAVVRGLANPITS 150

Query: 202 TTSE-------SDGRFVLVAKFTEARLQEIRNYAVEQNITILRNRVNELGVAEPLVQRQG 254
            T         S    +L  + +E       +  V Q + I+R R++E+G  EP +QRQG
Sbjct: 151 LTGAGATDITVSGTGDILTVELSEQEKLASDDRTVRQALEIIRRRIDEVGTREPTIQRQG 210

Query: 255 ATRIVVELPGVQDTARAKEILGATATLEFREVDDKADLAAAAAGRAPAGSEI--KFDRNG 312
           + RI++++PG+   +  KEI+G TA L F  V  +   A A AG    G+++    D +G
Sbjct: 211 SDRILIQVPGIGSASELKEIIGTTAQLTFNPVVGRGTDADANAG---VGNKVVPSLDEDG 267

Query: 313 RPVVLKKRVILGGSSITDASSSADEYGRPQVNISLDSEGGNKMSAFSKKNIGKLMATVFA 372
               ++   ++ G  + DA  S D+ GRP V+   ++ G  K   ++ +NIG   A V  
Sbjct: 268 VFYTVEAAPVVTGEELVDAQPSFDQNGRPAVSFRFNTTGARKFGDYTAENIGSPFAIVL- 326

Query: 373 EYKDSGKRSPEGKVILTKHEEVINQATIQSAL-GRNFRITGIDSPAEAHNLALLLRAGAL 431
                              EEV++   IQS + G +  ITG  +  E+ N+A+LLRAGAL
Sbjct: 327 ------------------DEEVVSAPVIQSHIPGGSGIITGNFTIEESTNMAILLRAGAL 368

Query: 432 IAPISIVEERTIGPSMGQQNIDMGIQACIWGMVAVMLFTVLYYRKFGMIANIALMANLVL 491
            A +  +EERTIGP +GQ +ID G  A I   V V++F  L Y  FG+ ANIAL+ N+ L
Sbjct: 369 PAGLEFLEERTIGPELGQDSIDAGKVATIVAFVGVLVFMALSYGLFGVFANIALILNIAL 428

Query: 492 IIGVMSMIPGATMTLPGIAGIVLTVGMAVDANVLIFERIREELREGKNPQQAIHQGYANA 551
           I G +S+I GAT+TLPGIAGIVLTVGMAVDANVLIFERIREEL+ G+ P +AI +GY+ A
Sbjct: 429 IFGALSLI-GATLTLPGIAGIVLTVGMAVDANVLIFERIREELKAGRGPARAIDEGYSKA 487

Query: 552 FSTIADANITTLITAIILFAVGTGAIKGFAVTLSIGILTSMFTAIVGTRCIVNLLYGGKR 611
            S I DANITT ITA+ILFA+G+G ++GFA+TL +GI+TS+FTAI  TR I+ + +  +R
Sbjct: 488 LSAILDANITTFITAVILFAMGSGPVRGFAITLGLGIMTSVFTAIFVTRVIIVMWFERRR 547

Query: 612 INKLSI 617
              + +
Sbjct: 548 PKTIEV 553