Pairwise Alignments

Query, 617 a.a., protein translocase subunit SecD from Vibrio cholerae E7946 ATCC 55056

Subject, 616 a.a., preprotein translocase subunit SecD (RefSeq) from Shewanella loihica PV-4

 Score =  755 bits (1950), Expect = 0.0
 Identities = 390/617 (63%), Positives = 480/617 (77%), Gaps = 1/617 (0%)

Query: 1   MLNRYPLWKYLMVMLTIAVAALYALPNIYGEDPAIQITGARGASVDMSTLDAVTDALNKA 60
           MLN+YP+WK LMV L IAV A YA+PN++GED A+Q+   RGA V+ ST   VTD L+  
Sbjct: 1   MLNKYPMWKNLMVALIIAVGAFYAIPNLFGEDHAVQVVATRGAEVNASTQSEVTDILSAK 60

Query: 61  QLSQKSIALENGSILVRFNDTDTQISARDIISEALGKDKIVALNLAPSTPYWLESIGAAP 120
            ++ K   LENG +LVR  D D Q+ A++ I+E LG   IVALNLAP+TP WLES+G +P
Sbjct: 61  GIAVKRSELENGQLLVRVADADQQLLAKEAIAEVLGDKYIVALNLAPATPQWLESMGGSP 120

Query: 121 MKLGLDLRGGVHFLMEVDMDAAMEKLVSQQEEAFRSDLRDEKIRYRAIRPLSDAVEVTLR 180
           MKLGLDLRGGVHFLMEVDM  A+ K+   +   FR+DLR EKIRY  IR     +E+  R
Sbjct: 121 MKLGLDLRGGVHFLMEVDMSEAIRKMTEAKIADFRTDLRGEKIRYAGIRNTPKGIEIKFR 180

Query: 181 DAEQLAQTKLLLESKHRDMTFTTSESDGRFVLVAKFTEARLQEIRNYAVEQNITILRNRV 240
           DAE LA+ +  L+S+  +M F  + S   F+L+A  +E  L++++  A++QNIT LRNRV
Sbjct: 181 DAENLAKAERFLKSRTNEMVFVDASSGSDFMLLANMSEIYLKQVKEEALQQNITTLRNRV 240

Query: 241 NELGVAEPLVQRQGATRIVVELPGVQDTARAKEILGATATLEFREVDDKADLAAAAAGRA 300
           NELGVAEP+VQRQGA RI+VELPGVQDTARAK+ILGATA++EF  VD+KAD AA AAGR 
Sbjct: 241 NELGVAEPVVQRQGAERIIVELPGVQDTARAKDILGATASIEFHMVDEKADAAAIAAGRV 300

Query: 301 PAGSEIKFDRNGRPVVLKKRVILGGSSITDASSSADEYGRPQVNISLDSEGGNKMSAFSK 360
             GS+I   R G  V L+K V+L G  I  A  S DEY RPQV+I+LDS+GG+  S  +K
Sbjct: 301 SPGSQIYDRREGGKVALQKEVMLTGDHIQGAQPSFDEYSRPQVSINLDSKGGSIFSNVTK 360

Query: 361 KNIGKLMATVFAEYKDSGKRSPEGKVILTKHEEVINQATIQSALGRNFRITGIDSPAEAH 420
            NIGK MAT+F EYKD+G ++P+G V + K EEVI+ ATIQ+ LGRNF I G+D  +EA 
Sbjct: 361 DNIGKPMATLFIEYKDNGAKNPDGSVKMDKIEEVISVATIQARLGRNFVINGLDH-SEAQ 419

Query: 421 NLALLLRAGALIAPISIVEERTIGPSMGQQNIDMGIQACIWGMVAVMLFTVLYYRKFGMI 480
           +LALLLRAGALIAP+SIVEERTIGPS+G +NID G+QA IWGM  V++F ++YYR FG+I
Sbjct: 420 SLALLLRAGALIAPVSIVEERTIGPSLGAENIDNGLQAMIWGMAVVLIFMLVYYRGFGLI 479

Query: 481 ANIALMANLVLIIGVMSMIPGATMTLPGIAGIVLTVGMAVDANVLIFERIREELREGKNP 540
           AN+AL ANLV+++GVMSMIPGA +TLPGIAG+VLTVGMAVD NVLI+ERIREELR G++ 
Sbjct: 480 ANLALTANLVMVVGVMSMIPGAVLTLPGIAGMVLTVGMAVDGNVLIYERIREELRAGRSV 539

Query: 541 QQAIHQGYANAFSTIADANITTLITAIILFAVGTGAIKGFAVTLSIGILTSMFTAIVGTR 600
           QQAIH+GY NAFSTIADANITT +TA+ILFAVGTGA+KGFAVTL IGI TSMFTAIVGTR
Sbjct: 540 QQAIHEGYGNAFSTIADANITTFMTALILFAVGTGAVKGFAVTLMIGIATSMFTAIVGTR 599

Query: 601 CIVNLLYGGKRINKLSI 617
            IVN ++GGKR+ KLSI
Sbjct: 600 SIVNAIWGGKRVKKLSI 616