Pairwise Alignments

Query, 617 a.a., protein translocase subunit SecD from Vibrio cholerae E7946 ATCC 55056

Subject, 388 a.a., preprotein translocase subunit SecD from Methanococcus maripaludis S2

 Score = 75.9 bits (185), Expect = 3e-18
 Identities = 99/402 (24%), Positives = 168/402 (41%), Gaps = 56/402 (13%)

Query: 191 LLESKHRDMTFTTSESDGRFVLVAKFTEARLQEIRNYAVEQNITILRNRVNELGVAEPLV 250
           LL    + ++F    S G  +++   TE+ L E     V +   IL +R+N  G+++  +
Sbjct: 20  LLLIAFKGISFGVDLSGGSTIVLQ--TESELSESEMTTVNE---ILTSRLNTNGLSDVRI 74

Query: 251 QRQGATRIVVELPGVQDTARAKEILGATATLEFREVDDKADLAAAAAGRAPAGSEIKFDR 310
             +G+  IV+E+P   D  R ++IL  T    F  V D           A  G ++ +  
Sbjct: 75  YPRGSDEIVIEIPESADLERIQKIL--TQQGVFTAVIDNQT--------AYTGQDVSY-- 122

Query: 311 NGRPVVLKKRVILGGSSITDASSSADEYGRPQVNISLDSEGGNKMSAFSKKNIGKLMATV 370
                            + +   +A  YG   V   L  +G  K   F+    GK    V
Sbjct: 123 -----------------VEEPGMTASGYG---VGFKLTLDGAQK---FADVAYGKGGYPV 159

Query: 371 FAEYKDSGKRSPEGKVILTKHEEVINQATIQSALGRNFRITGIDSPAEAHNLALLLRAGA 430
                +    +P     L      I+Q  + +  G N     ID   EA  +   L++G+
Sbjct: 160 ELYMDEKAISAPLLSADLADGN--IHQNQVITVAGSNPTEEDID---EAWVIYTALKSGS 214

Query: 431 LIAPISIVEERTIGPSMGQQNIDMGIQACIWGMVAVMLFTVLYYRKFGMIANIAL--MAN 488
           L   + I    ++ P++G + I   + A I+  +AV       Y+   ++  I +   + 
Sbjct: 215 LPVKVHIEYISSVSPTLGSEFIKGSVIAGIFAFIAVAAVISFRYKNPKIVLPILITGFSE 274

Query: 489 LVLIIGVMSMIPGATMTLPGIAGIVLTVGMAVDANVLIF-ERIREELREGKNPQQAIHQG 547
           ++LI+G  S+I    + L  IAGI+  VG  VD  ++I  E I  E ++       + + 
Sbjct: 275 VLLILGFASLIDWK-LDLASIAGIIAAVGTGVDHQIVITDETISGEAKK-------VTKS 326

Query: 548 YANAFSTIADANITTLITAIILFAVGTGAIKGFAVTLSIGIL 589
              AF  I  A  TT+   + LF +G G +KGFA+T   G+L
Sbjct: 327 IKRAFFIIFGAAATTIAAMLPLFVMGIGMLKGFAITTIAGVL 368