Pairwise Alignments

Query, 617 a.a., protein translocase subunit SecD from Vibrio cholerae E7946 ATCC 55056

Subject, 616 a.a., protein-export membrane protein SecD (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  734 bits (1895), Expect = 0.0
 Identities = 383/617 (62%), Positives = 472/617 (76%), Gaps = 1/617 (0%)

Query: 1   MLNRYPLWKYLMVMLTIAVAALYALPNIYGEDPAIQITGARGASVDMSTLDAVTDALNKA 60
           MLN+YP+WK +MV+L IA+   YA+PN++GED A+Q+   RGA V  ST   V + L   
Sbjct: 1   MLNKYPMWKNIMVVLIIAIGCFYAVPNLFGEDHAVQVVATRGAEVTASTQARVNELLASK 60

Query: 61  QLSQKSIALENGSILVRFNDTDTQISARDIISEALGKDKIVALNLAPSTPYWLESIGAAP 120
            ++ K   LE G +LVR  + D Q+ A+++I+EALG    VALNLAP+TP WLES+G +P
Sbjct: 61  GIAVKRSELEKGQLLVRVQNADQQLLAKEVIAEALGDKFTVALNLAPATPKWLESMGGSP 120

Query: 121 MKLGLDLRGGVHFLMEVDMDAAMEKLVSQQEEAFRSDLRDEKIRYRAIRPLSDAVEVTLR 180
           MKLGLDLRGGVHFLMEVDM  A+ K+   +   FRS LR+EKIRY  IR  +  +E+  R
Sbjct: 121 MKLGLDLRGGVHFLMEVDMGEAIRKMEEAKVADFRSQLREEKIRYAGIRINAQGIEIKFR 180

Query: 181 DAEQLAQTKLLLESKHRDMTFTTSESDGRFVLVAKFTEARLQEIRNYAVEQNITILRNRV 240
           DAE LA  +  L+S+  DM F+       F L A  +E  L++++  A++QNIT +RNRV
Sbjct: 181 DAESLASAERFLKSRSNDMVFSDVSKGEDFALQAVMSETYLKQVKEEALQQNITTIRNRV 240

Query: 241 NELGVAEPLVQRQGATRIVVELPGVQDTARAKEILGATATLEFREVDDKADLAAAAAGRA 300
           NELGV+EP+VQRQGA RI+VELPGVQDTARAKEILGATA++EF  VDDKAD  AA AGR 
Sbjct: 241 NELGVSEPVVQRQGAERIIVELPGVQDTARAKEILGATASIEFHMVDDKADANAAQAGRV 300

Query: 301 PAGSEIKFDRNGRPVVLKKRVILGGSSITDASSSADEYGRPQVNISLDSEGGNKMSAFSK 360
           PAGSE+   R G  VVLKK V+L G  IT A  S D+Y RPQV+I+LD++GG   S  +K
Sbjct: 301 PAGSEVYQRREGGQVVLKKEVMLTGDHITGAQPSFDQYSRPQVSINLDAKGGTIFSNVTK 360

Query: 361 KNIGKLMATVFAEYKDSGKRSPEGKVILTKHEEVINQATIQSALGRNFRITGIDSPAEAH 420
            NIGK MAT+F EYKDSG+R+ +G V + K EEVI+ ATIQ+ LGRNF ITG+ S  EA 
Sbjct: 361 DNIGKPMATLFIEYKDSGERNADGSVKMLKIEEVISVATIQARLGRNFVITGL-SHGEAQ 419

Query: 421 NLALLLRAGALIAPISIVEERTIGPSMGQQNIDMGIQACIWGMVAVMLFTVLYYRKFGMI 480
           NLALLLRAGALIAP+SIVEERTIGPS+G +NI  GI A +W M AV+LF ++YYR FG+I
Sbjct: 420 NLALLLRAGALIAPVSIVEERTIGPSLGAENIASGINAMLWSMGAVVLFMLIYYRAFGLI 479

Query: 481 ANIALMANLVLIIGVMSMIPGATMTLPGIAGIVLTVGMAVDANVLIFERIREELREGKNP 540
           ANIAL  NLV+I+GVMSMIPGA +TLPGIAG+VLT+GMAVD NVLI+ERIR+E+R G++ 
Sbjct: 480 ANIALTMNLVMIVGVMSMIPGAVLTLPGIAGMVLTIGMAVDGNVLIYERIRDEIRAGRSV 539

Query: 541 QQAIHQGYANAFSTIADANITTLITAIILFAVGTGAIKGFAVTLSIGILTSMFTAIVGTR 600
           QQAI +GYANAFS+IAD+NITT ITA+ILFAVG+GA+KGFAVTL IGI TSMFTAIVGTR
Sbjct: 540 QQAIQEGYANAFSSIADSNITTFITALILFAVGSGAVKGFAVTLMIGIATSMFTAIVGTR 599

Query: 601 CIVNLLYGGKRINKLSI 617
            IVN ++GGKRI  LSI
Sbjct: 600 AIVNAVWGGKRIQTLSI 616