Pairwise Alignments

Query, 617 a.a., protein translocase subunit SecD from Vibrio cholerae E7946 ATCC 55056

Subject, 315 a.a., protein-export membrane protein SecF (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 64.3 bits (155), Expect = 7e-15
 Identities = 38/166 (22%), Positives = 85/166 (51%), Gaps = 6/166 (3%)

Query: 436 SIVEERT--IGPSMGQQNIDMGIQACIWGMVAVMLFTVLYYR-KFGMIANIALMANLVLI 492
           ++V++R   +GP +G++  + G  A +  ++ +M++    +  +    A  AL  ++++ 
Sbjct: 117 NVVQKRVEFVGPQVGKELAEQGGLAVLVALICIMIYIAFRFEWRLATGAVAALAHDVMVT 176

Query: 493 IGVMSMIPGATMTLPGIAGIVLTVGMAVDANVLIFERIREELREGKN--PQQAIHQGYAN 550
           +GV S+       L  +AG++  VG +++  +++F+R+RE   + +   P++ ++     
Sbjct: 177 LGVFSLTQ-MEFDLTVLAGVLTVVGYSLNDTIVVFDRVRENFLKMRKSEPEEVVNVSITQ 235

Query: 551 AFSTIADANITTLITAIILFAVGTGAIKGFAVTLSIGILTSMFTAI 596
             S       TTL+  + LF  G   I GFA  L +GI    ++++
Sbjct: 236 TMSRTIITMGTTLVVVVALFLSGGSMIHGFAAALLLGISVGTYSSV 281