Pairwise Alignments

Query, 617 a.a., protein translocase subunit SecD from Vibrio cholerae E7946 ATCC 55056

Subject, 294 a.a., protein-export membrane protein SecF (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 64.3 bits (155), Expect = 7e-15
 Identities = 51/177 (28%), Positives = 96/177 (54%), Gaps = 11/177 (6%)

Query: 430 ALIAPISIVEERTIGPSMGQQNIDMGIQACIWGMVAVMLFTVLYYRKFGMIANIALMANL 489
           A +  + ++    +GP +G++  + G  A +  M+A++ +  L YR    +A+ AL A +
Sbjct: 100 APLGEVQVLNTSVVGPQVGKELAEQGGLALLVAMLAILGY--LSYRFEWRLASGALFALV 157

Query: 490 VLIIGVMSMIPGATM--TLPGIAGIVLTVGMAVDANVLIFERIREELREGKNPQQAI--- 544
             ++ V++      M   L  +A ++  +G +++ +++I +RIRE L     P+ AI   
Sbjct: 158 HDVMFVLAFFSLTQMEFNLTVLAAVLAILGYSLNDSIIIADRIRELLIA--KPKLAIQEI 215

Query: 545 -HQGYANAFSTIADANITTLITAIILFAVGTGAIKGFAVTLSIGILTSMFTAI-VGT 599
            +Q     FS     + TTL+T   L+ +G G ++GF++ + IGILT  F++I VGT
Sbjct: 216 NNQAIVATFSRTMVTSGTTLMTVGALWIMGGGPLEGFSIAMFIGILTGTFSSISVGT 272