Pairwise Alignments

Query, 617 a.a., protein translocase subunit SecD from Vibrio cholerae E7946 ATCC 55056

Subject, 618 a.a., protein-export membrane protein SecD (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  484 bits (1246), Expect = e-141
 Identities = 268/624 (42%), Positives = 401/624 (64%), Gaps = 39/624 (6%)

Query: 1   MLNRYPLWKYLMVMLTIAVAALYALPNIYGEDPAIQITGARGASVDMSTLDAVTDALNKA 60
           +LN Y  WKY+++++TI V    ALP  YGE+ A+Q+ GA+ A ++++ ++ + D L   
Sbjct: 9   LLNHYSAWKYIVLIVTIIVMLFSALPTWYGENAAVQV-GAK-AGLNLTPIE-LRDKLKAQ 65

Query: 61  QLSQKSIAL-----ENGSILVRFNDTDTQISARDIISEALGKDKIVALNLAPSTPYWLES 115
            +  K I +     + G  L+  ND   Q   + ++S  + + K + L L  + P WL++
Sbjct: 66  GIEVKRIEVKQHGEDKGQTLIVLNDDSEQTLVKTLVSSMVIEPKELTLALVSAAPSWLQN 125

Query: 116 IGAAPMKLGLDLRGGVHFLMEVDMDAAMEKLVSQQEEAFRSDLRDEKIRYRAIR------ 169
           +G  P+KLGLDLRGGV FL++VD+    +       E+ R  LR+++IR  ++R      
Sbjct: 126 LGFEPIKLGLDLRGGVQFLLDVDVQPVYQAQADALVESLRQFLREQQIRGASVRIDNTRD 185

Query: 170 PLSDAVEVTLRDAEQL-----AQTKLLLESKHRDMTFTTSESDGRFVLVAKFTEARLQEI 224
            ++  + + L DA Q      A  +  ++  +     T +++     LV K ++    ++
Sbjct: 186 DVALQIAIALSDAAQADNSARAAVRQFIQQSYPTWQLTNADNG----LVIKLSQDEQSKL 241

Query: 225 RNYAVEQNITILRNRVNELGVAEPLVQRQGATRIVVELPGVQDTARAKEILGATATLEFR 284
           RN  V+QN+ I+R+R+ ELG+ E LVQRQG  RI +ELPGVQD A AK ++GATA+L F 
Sbjct: 242 RNLTVQQNLQIMRSRIEELGITEALVQRQGEHRIRIELPGVQDPAAAKNVIGATASLAFF 301

Query: 285 EVDDKADLAAAAAGRAPAGSEIKFDRNGRPVVLKKRVILGGSSITDASSSADEYGRPQVN 344
           EV +   + A          ++  D++G PV + +  +LGG  I DA ++  E G  +VN
Sbjct: 302 EVKESGSVNA----------QVLKDKSGNPVYVARSPVLGGDHIVDARANIGEMGMAEVN 351

Query: 345 ISLDSEGGNKMSAFSKKNIGKLMATVFAEYKDSGKRSPEGKVILTKHEEVINQATIQSAL 404
           I LD  GG KMS FS+ NIGK MAT ++EY     R  +GK   T  +E+I+ ATIQS L
Sbjct: 352 IHLDRIGGQKMSEFSRANIGKPMATSYSEYS----RDEQGKAKQT--QEIISVATIQSQL 405

Query: 405 GRNFRITGIDSPAEAHNLALLLRAGALIAPISIVEERTIGPSMGQQNIDMGIQACIWGMV 464
           G  FRITG  +  EA  LALLLRAG++ AP++IVEERTIGP++G +NI+ G  A   GM 
Sbjct: 406 GDRFRITGAGTYQEAQQLALLLRAGSMTAPVTIVEERTIGPTLGAENIENGFAALGLGMG 465

Query: 465 AVMLFTVLYYRKFGMIANIALMANLVLIIGVMSMIPGATMTLPGIAGIVLTVGMAVDANV 524
             +LF  L+YR+ G +AN+AL++N+V++ G++++IPGA +TLPGIAG+VLTVGMAVD NV
Sbjct: 466 ITLLFMALWYRRLGWVANVALISNMVILFGLLALIPGAVLTLPGIAGLVLTVGMAVDTNV 525

Query: 525 LIFERIREELREGKNPQQAIHQGYANAFSTIADANITTLITAIILFAVGTGAIKGFAVTL 584
           LIFERI+++L+EG++   AI  G+ +AFSTI DAN TT+ITA++L+++G G I+GFA+TL
Sbjct: 526 LIFERIKDKLKEGRSFALAIDTGFDSAFSTIFDANFTTMITAVVLYSIGNGPIQGFALTL 585

Query: 585 SIGILTSMFTAIVGTRCIVNLLYG 608
            +G+LTSMFT I  +R ++NL+YG
Sbjct: 586 GLGLLTSMFTGIFASRALINLVYG 609