Pairwise Alignments

Query, 617 a.a., protein translocase subunit SecD from Vibrio cholerae E7946 ATCC 55056

Subject, 532 a.a., protein-export membrane protein SecD (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  319 bits (818), Expect = 2e-91
 Identities = 206/509 (40%), Positives = 294/509 (57%), Gaps = 32/509 (6%)

Query: 121 MKLGLDLRGGVHFLMEVDMDAAMEKLVSQQEEAFRSDLRDEKIRYRAIRPL-SDAVEVTL 179
           + LGLDL GG+H  + VD+D A+E  +SQ  +  RS  R++ I     R L  D VE  L
Sbjct: 44  ISLGLDLMGGIHLTLGVDVDKAVENSLSQMGQDIRSSAREKDIFILRPRILPGDRVEFVL 103

Query: 180 RDAEQLAQTKLLLESKHRDMTFTTS-ESDG-RFVLVAKFTEARLQEIRNYAVEQNITILR 237
             A Q  Q   +L  +   +      E DG +   VA   + +   I + A++Q +  +R
Sbjct: 104 AKAAQRDQLGEMLAKQFPQLAVGAPVEIDGGQLRYVATLKKEQRTHIEDMALDQAVKTIR 163

Query: 238 NRVNELGVAEPLVQRQGATRIVVELPGVQDTARAKEILGATATLEFREVDDKADLAAAAA 297
           NR+++ GVAEP +++Q   RI V+LPG+ D ARA +I+G TA LEFR V D  D    A 
Sbjct: 164 NRIDQFGVAEPDIRKQQDHRIQVQLPGLADPARAIQIIGKTAHLEFRIVRDDVDPEKLAK 223

Query: 298 GRAPAGSEI--KFDRNGR------PVVLKKRVILGGSSITDASSSADEYGRPQVNISLDS 349
           G  P G ++     R G       PV L K ++L G ++ DA    D++ +  V ++ +S
Sbjct: 224 GLVPPGVDVLPMMRRGGDGSAGEVPVALDKEILLTGENVADARPGFDQFNQAYVMLTFNS 283

Query: 350 EGGNKMSAFSKKNIGKLMATVFAEYKDSGKRSPEGKVILTKHEEVINQATIQSAL-GRNF 408
            G       + +N+ K +A V            +GKV         +  +IQ  + G   
Sbjct: 284 RGAAIFERVTGENVRKRLAIVL-----------DGKVY--------SAPSIQEKIAGGRA 324

Query: 409 RITGIDSPAEAHNLALLLRAGALIAPISIVEERTIGPSMGQQNIDMGIQACIWGMVAVML 468
            ITG  +  EA +LA++LRAG+L AP++++EERT+GPS+GQ++ID GI A   G  AV++
Sbjct: 325 SITGHFTTEEAQDLAIVLRAGSLPAPVNVLEERTVGPSLGQESIDSGILAGQVGGAAVVV 384

Query: 469 FTVLYYRKFGMIANIALMANLVLIIGVMSMIPGATMTLPGIAGIVLTVGMAVDANVLIFE 528
           FT+LYY   G IA   L   ++LI+  M+   GAT+TLPG+AGI LT+GM VDANVLI+E
Sbjct: 385 FTILYYGASGAIAVGMLCFTILLILAGMAGF-GATLTLPGLAGIALTIGMGVDANVLIYE 443

Query: 529 RIREELREGKNPQQAIHQGYANAFSTIADANITTLITAIILFAVGTGAIKGFAVTLSIGI 588
           RIREELR G  P  AIH G+  A  +I D+N+TT+I A IL+  GTG ++GFAVTL++GI
Sbjct: 444 RIREELRRGLTPLAAIHAGFDRAMLSITDSNLTTVIAAAILYQFGTGPVRGFAVTLTLGI 503

Query: 589 LTSMFTAIVGTRCIVNLLYGGKRINKLSI 617
           L SMFTAI  +R + +L        +LSI
Sbjct: 504 LASMFTAIFVSRAVFDLWMRLSPSKRLSI 532