Pairwise Alignments

Query, 617 a.a., protein translocase subunit SecD from Vibrio cholerae E7946 ATCC 55056

Subject, 687 a.a., preprotein translocase subunit SecD from Burkholderia phytofirmans PsJN

 Score =  520 bits (1338), Expect = e-151
 Identities = 290/621 (46%), Positives = 398/621 (64%), Gaps = 28/621 (4%)

Query: 2   LNRYPLWKYLMVMLTIAVAALYALPNIYGEDPAIQITGARGA-SVDMSTLDAVTDALNKA 60
           +NRYPLWKY ++++ + +  +Y LPN++GE PA+Q++  +    +D +TL AV  AL   
Sbjct: 1   MNRYPLWKYAVMLVALVIGLVYTLPNLFGEAPAVQVSSGKATVKLDSTTLSAVEAALAAN 60

Query: 61  QLSQKSIALENGS----ILVRFNDTDTQISARDIISEALGKDK-----IVALNLAPSTPY 111
           Q+    +  +N +    I VR  DTDTQ+  +D++ ++L  D      IVALNL  ++P 
Sbjct: 61  QIKPDDVTFDNSATNANIRVRLPDTDTQLRVKDLLQKSLNSDPTDPQYIVALNLQSASPR 120

Query: 112 WLESIGAAPMKLGLDLRGGVHFLMEVDMDAAMEKLVSQQEEAFRSDLRDEKIRYRAIRPL 171
           WL ++ A PM LGLDLRGGVHFL++VDM  A+ K +       R+ LRD+ IR   +  +
Sbjct: 121 WLTALHALPMYLGLDLRGGVHFLLQVDMAGALNKKLDSDASDARTLLRDKNIRDGGVNRV 180

Query: 172 SDAVEVTLRDAEQLAQTKLLLESKHRDMTFTTSES-DGRFVLVAKFTEARLQEIRNYAVE 230
           + +V +   D          L     ++ + +    DG   LV  FT A  + +++ A++
Sbjct: 181 NQSVVINFADQATADNASKQLSRSIAELQWASQAGPDGGVQLVGTFTPAVQKAVQDAALK 240

Query: 231 QNITILRNRVNELGVAEPLVQRQGATRIVVELPGVQDTARAKEILGATATLEFREVDDKA 290
           QNIT L NRVNELGVAEP++Q+QGA RIVVELPGVQDTA+AK+I+G TATLE R + D  
Sbjct: 241 QNITTLHNRVNELGVAEPVIQQQGADRIVVELPGVQDTAKAKDIIGRTATLEAR-LADPV 299

Query: 291 DLAAAAAGRAPAGSEIKFDRNGRPVVLKKRVILGGSSITDASSSADEYGRPQVNISLDSE 350
           +     +   P G E+    N  PV+L+K++I  G  I DAS+  DE+ RP VNI LDS 
Sbjct: 300 NTHPNPSDPVPPGDELFTQGNQTPVLLRKQIIFTGDRIIDASAGFDEHQRPSVNIRLDSA 359

Query: 351 GGNKMSAFSKKNIGKLMATVFAEYKDSGKRSPEGKVILTKHEEVINQATIQSALGRNFRI 410
           GG  +++ S+ NIGK MA V  E         +GK       EV+  ATIQS LG  F+I
Sbjct: 360 GGRAVASISRDNIGKPMAMVLFE---------KGK------GEVLTVATIQSELGDRFQI 404

Query: 411 TGIDSPAEAHNLALLLRAGALIAPISIVEERTIGPSMGQQNIDMGIQACIWGMVAVMLFT 470
           TG  +P  A +LALLLRAG+L AP+ I+EERTIGPS+G  NI  G  + +WG  A+ +F 
Sbjct: 405 TGQATPQGAADLALLLRAGSLAAPMDIIEERTIGPSLGADNIKKGFHSVVWGFAAIAVFM 464

Query: 471 VLYYRKFGMIANIALMANLVLIIGVMSMIPGATMTLPGIAGIVLTVGMAVDANVLIFERI 530
           + YY  FG+I+ I L  NL+L+I V+SM+  AT+TLPGIA I L +GMA+DANVLI ER+
Sbjct: 465 IAYYMLFGVISMIGLSVNLLLLIAVLSMLQ-ATLTLPGIAAIALALGMAIDANVLINERV 523

Query: 531 REELREGKNPQQAIHQGYANAFSTIADANITTLITAIILFAVGTGAIKGFAVTLSIGILT 590
           REELR G  PQ AI  GYA+A++TI D+N+TTLI  I L A G+G ++GFA+   IGILT
Sbjct: 524 REELRNGAPPQLAIQNGYAHAWATILDSNVTTLIAGIALLAFGSGPVRGFAIVHCIGILT 583

Query: 591 SMFTAIVGTRCIVNLLYGGKR 611
           SMF+A+  +R IVNL YGGK+
Sbjct: 584 SMFSAVFFSRGIVNLWYGGKK 604