Pairwise Alignments

Query, 617 a.a., protein translocase subunit SecD from Vibrio cholerae E7946 ATCC 55056

Subject, 315 a.a., preprotein translocase subunit SecF (RefSeq) from Shewanella sp. ANA-3

 Score = 69.3 bits (168), Expect = 2e-16
 Identities = 60/298 (20%), Positives = 131/298 (43%), Gaps = 34/298 (11%)

Query: 306 IKFDRNGRPVVLKKRVILGGSSITDASSSADEYGRPQVNISLDSEGGN--KMSAFSKKNI 363
           + F R+  P+ +   +++ GS ++ A+          +N  LD  GG   +M      ++
Sbjct: 11  VNFLRHALPISIMSAILVFGSLVSLATKG--------INWGLDFTGGTVVEMEFTQPVDL 62

Query: 364 GKLMATVFAEYKDSGKRSPEGKVILTKHEEVINQATIQSALGRNFRITGIDSPAEAHNLA 423
             L   + A   D       G        +V+ + +++  +  + ++  + + A+  +  
Sbjct: 63  NVLRTKLSAPELDGAVVQNFGS-----SRDVLVRLSVKEGVSSDVQVKSVMAAAQQVD-- 115

Query: 424 LLLRAGALIAPISIVEERTIGPSMGQQNIDMGIQACIWGMVAVMLFTVLYYR---KFGMI 480
                    A +       +GP +G++  + G  A +  ++ +M++    +     FG +
Sbjct: 116 ---------AGVQQKRVEFVGPQVGKELAEQGGLAVLVALICIMIYVSFRFEWRLAFGSV 166

Query: 481 ANIALMANLVLIIGVMSMIPGATMTLPGIAGIVLTVGMAVDANVLIFERIREELREGKN- 539
           A  AL  ++++ +GV S+       L  +AG++  VG +++  +++F+RIRE   + +  
Sbjct: 167 A--ALAHDVIVTLGVFSVFQ-LEFDLTVLAGVLTVVGYSLNDTIVVFDRIRENFLKMRKS 223

Query: 540 -PQQAIHQGYANAFSTIADANITTLITAIILFAVGTGAIKGFAVTLSIGILTSMFTAI 596
            P++ ++       S       TTL+T + LF  G   I GFA  L +GI    +++I
Sbjct: 224 EPEEVVNVSITQTMSRTIITTGTTLVTVVALFLKGGTMIHGFATALLLGIFVGTYSSI 281