Pairwise Alignments

Query, 617 a.a., protein translocase subunit SecD from Vibrio cholerae E7946 ATCC 55056

Subject, 616 a.a., preprotein translocase subunit SecD (RefSeq) from Shewanella sp. ANA-3

 Score =  744 bits (1920), Expect = 0.0
 Identities = 386/617 (62%), Positives = 473/617 (76%), Gaps = 1/617 (0%)

Query: 1   MLNRYPLWKYLMVMLTIAVAALYALPNIYGEDPAIQITGARGASVDMSTLDAVTDALNKA 60
           MLN+YP+WK +MV+L IA+   YA+PN++GED A+Q+   RGA V  ST   V + L   
Sbjct: 1   MLNKYPMWKNIMVVLVIAIGCFYAVPNLFGEDHAVQVVATRGAEVTASTQARVNELLASK 60

Query: 61  QLSQKSIALENGSILVRFNDTDTQISARDIISEALGKDKIVALNLAPSTPYWLESIGAAP 120
            ++ K   LE G +LVR  + D Q+ A++ I+E LG    VALNLAP+TP WLES+G +P
Sbjct: 61  GIAVKRSELEKGQLLVRVQNADQQLLAKETIAEDLGDKFTVALNLAPATPQWLESMGGSP 120

Query: 121 MKLGLDLRGGVHFLMEVDMDAAMEKLVSQQEEAFRSDLRDEKIRYRAIRPLSDAVEVTLR 180
           MKLGLDLRGGVHFLMEVDM  A+ K+   +   FRS LR+EKIRY  IR  +  +E+  R
Sbjct: 121 MKLGLDLRGGVHFLMEVDMGEAIRKMEEAKVADFRSQLREEKIRYAGIRNNAQGIEIKFR 180

Query: 181 DAEQLAQTKLLLESKHRDMTFTTSESDGRFVLVAKFTEARLQEIRNYAVEQNITILRNRV 240
           DAE LA  +  L+S+  DM F+       F L A  +E  L++I+  A++QNIT +RNRV
Sbjct: 181 DAESLASAERFLKSRSNDMVFSDVSKGEDFALQAVMSETYLKQIKEEALQQNITTIRNRV 240

Query: 241 NELGVAEPLVQRQGATRIVVELPGVQDTARAKEILGATATLEFREVDDKADLAAAAAGRA 300
           NELGVAEP+VQRQGA RI+VELPGVQDTARAKEILGATA++EF  VDDKAD  AA +GR 
Sbjct: 241 NELGVAEPVVQRQGAERIIVELPGVQDTARAKEILGATASIEFHMVDDKADPNAAQSGRV 300

Query: 301 PAGSEIKFDRNGRPVVLKKRVILGGSSITDASSSADEYGRPQVNISLDSEGGNKMSAFSK 360
           PAGSE+   R G  VVLKK V+L G  IT A  S D+Y RPQV+I+LD++GG   S  +K
Sbjct: 301 PAGSEVYQRREGGQVVLKKEVMLTGDHITGAQPSFDQYSRPQVSINLDAKGGTIFSNVTK 360

Query: 361 KNIGKLMATVFAEYKDSGKRSPEGKVILTKHEEVINQATIQSALGRNFRITGIDSPAEAH 420
            NIGK MAT+F EYKDSG+R+ +G V + K +EVI+ ATIQ+ LGRNF ITG+ S  EA 
Sbjct: 361 DNIGKPMATLFIEYKDSGERNADGSVKMQKIQEVISVATIQARLGRNFVITGL-SHGEAQ 419

Query: 421 NLALLLRAGALIAPISIVEERTIGPSMGQQNIDMGIQACIWGMVAVMLFTVLYYRKFGMI 480
           NLALLLRAGALIAP+SIVEERTIGPS+G +NI+ G+QA IWGM  V++F ++YYR FG+I
Sbjct: 420 NLALLLRAGALIAPVSIVEERTIGPSLGAENIESGVQAMIWGMAVVLIFMLVYYRSFGLI 479

Query: 481 ANIALMANLVLIIGVMSMIPGATMTLPGIAGIVLTVGMAVDANVLIFERIREELREGKNP 540
           AN+AL ANLV+++GVMSMIPGA +TLPGIAG+VLTVGMAVD NVLI+ERIREELR G++ 
Sbjct: 480 ANLALTANLVMVVGVMSMIPGAVLTLPGIAGMVLTVGMAVDGNVLIYERIREELRAGRSV 539

Query: 541 QQAIHQGYANAFSTIADANITTLITAIILFAVGTGAIKGFAVTLSIGILTSMFTAIVGTR 600
           QQAIH+GY NAFSTIADANITT +TA+ILFAVGTGAIKGFAVTL IGI TSMFTAIVGTR
Sbjct: 540 QQAIHEGYGNAFSTIADANITTFLTALILFAVGTGAIKGFAVTLMIGIATSMFTAIVGTR 599

Query: 601 CIVNLLYGGKRINKLSI 617
            IVN ++GGKR+  LSI
Sbjct: 600 AIVNAIWGGKRVKTLSI 616