Pairwise Alignments

Query, 617 a.a., protein translocase subunit SecD from Vibrio cholerae E7946 ATCC 55056

Subject, 294 a.a., preprotein translocase subunit SecF (RefSeq) from Shewanella sp. ANA-3

 Score = 63.5 bits (153), Expect = 1e-14
 Identities = 51/177 (28%), Positives = 95/177 (53%), Gaps = 11/177 (6%)

Query: 430 ALIAPISIVEERTIGPSMGQQNIDMGIQACIWGMVAVMLFTVLYYRKFGMIANIALMANL 489
           A +  + ++    +GP +G++  + G  A +  M+ ++ +  L YR    +A+ AL A +
Sbjct: 100 APLGEVQVLNTSIVGPQVGKELAEQGGLALLVAMLCILGY--LSYRFEWRLASGALFALV 157

Query: 490 VLIIGVMSMIPGATM--TLPGIAGIVLTVGMAVDANVLIFERIREELREGKNPQQAI--- 544
             +I V++      M   L  +A ++  +G +++ +++I +RIRE L     P+ AI   
Sbjct: 158 HDVIFVLAFFSLTQMEFNLTVLAAVLAILGYSLNDSIIIADRIRELLIA--KPKLAIQEI 215

Query: 545 -HQGYANAFSTIADANITTLITAIILFAVGTGAIKGFAVTLSIGILTSMFTAI-VGT 599
            +Q     FS     + TTL+T   L+ +G G ++GF++ + IGILT  F++I VGT
Sbjct: 216 NNQAIVATFSRTMVTSGTTLMTVGALWIMGGGPLEGFSIAMFIGILTGTFSSISVGT 272