Pairwise Alignments

Query, 617 a.a., protein translocase subunit SecD from Vibrio cholerae E7946 ATCC 55056

Subject, 624 a.a., preprotein translocase subunit SecD (RefSeq) from Shewanella sp. ANA-3

 Score =  485 bits (1248), Expect = e-141
 Identities = 274/626 (43%), Positives = 398/626 (63%), Gaps = 37/626 (5%)

Query: 1   MLNRYPLWKYLMVMLTIAVAALYALPNIYGEDPAIQITGARGASVDMSTLDAVTDALNKA 60
           +LN Y  WKYL++++TI V    ALP  YGED A+Q+ GA+ A ++++ ++ + D L   
Sbjct: 9   LLNHYSAWKYLVLIVTIIVMLFSALPTWYGEDAAVQV-GAK-AGLNLTPIE-LRDKLKAQ 65

Query: 61  QLSQKSIAL-----------ENGSILVRFNDTDTQISARDIISEALGKDKIVALNLAPST 109
            +  K I +           E G  L+  ND   Q   + ++S  + + K + L L  + 
Sbjct: 66  GVEVKRIEVKHAQQGSANSSEGGQTLIVLNDDSEQTLVKTLVSSMVSEPKELTLALVSAA 125

Query: 110 PYWLESIGAAPMKLGLDLRGGVHFLMEVDMDAAMEKLVSQQEEAFRSDLRDEKIRYRAIR 169
           P WL+++G  P+KLGLDLRGGV FL++VD+    +       E+ R  LR+++IR  ++R
Sbjct: 126 PSWLQNMGFEPIKLGLDLRGGVQFLLDVDVQPVYQAQADALVESLRLFLREQQIRGASVR 185

Query: 170 PLS---DA---VEVTLRDAEQLAQTKLLLESKHRDMTFTTSE-SDGRFVLVAKFTEARLQ 222
             S   DA   +E+   DA Q          +    ++ T + ++    LV K  +    
Sbjct: 186 IDSTRDDAGLQIEIAFNDAAQSTNNARSTIRQFMQQSYPTWQLTNADNGLVVKLAQEEQI 245

Query: 223 EIRNYAVEQNITILRNRVNELGVAEPLVQRQGATRIVVELPGVQDTARAKEILGATATLE 282
           ++RN  V+QN+ I+R+R+ ELG+ E LVQRQG  RI +ELPGVQD A AK ++GATA+L 
Sbjct: 246 KLRNLTVQQNLQIMRSRIEELGITEALVQRQGEHRIRIELPGVQDPAAAKNVIGATASLA 305

Query: 283 FREVDDKADLAAAAAGRAPAGSEIKFDRNGRPVVLKKRVILGGSSITDASSSADEYGRPQ 342
           F EV +   + A          ++  D++G PV + +  +LGG  I DA ++  E G  +
Sbjct: 306 FFEVKESGSVNA----------QVLKDKSGNPVYVARTPVLGGDHIVDARANIGEMGMAE 355

Query: 343 VNISLDSEGGNKMSAFSKKNIGKLMATVFAEYKDSGKRSPEGKVILTKHEEVINQATIQS 402
           VNI LD  GG KMS FS+ NIGK MAT ++EY     R  +GK   T  +E+I+ ATIQS
Sbjct: 356 VNIHLDRIGGQKMSEFSRANIGKPMATSYSEYS----RDEQGKAKQT--QEIISVATIQS 409

Query: 403 ALGRNFRITGIDSPAEAHNLALLLRAGALIAPISIVEERTIGPSMGQQNIDMGIQACIWG 462
            LG  FRITG  +  EA  LALLLRAG++ AP++IVEERTIGP++G +NI  G  A   G
Sbjct: 410 QLGDRFRITGAGTYQEAQQLALLLRAGSMTAPVTIVEERTIGPTLGAENIQNGFAALGLG 469

Query: 463 MVAVMLFTVLYYRKFGMIANIALMANLVLIIGVMSMIPGATMTLPGIAGIVLTVGMAVDA 522
           M   +LF  L+YR+ G +AN+AL+AN+V++ G++++IPGA +TLPGIAG+VLTVGMAVD 
Sbjct: 470 MGITLLFMALWYRRLGWVANVALIANMVILFGLLALIPGAVLTLPGIAGLVLTVGMAVDT 529

Query: 523 NVLIFERIREELREGKNPQQAIHQGYANAFSTIADANITTLITAIILFAVGTGAIKGFAV 582
           NVLIFERI+++L+EG++   AI  G+ +AFSTI DAN TT+ITA++L+++G G I+GFA+
Sbjct: 530 NVLIFERIKDKLKEGRSFALAIDTGFDSAFSTIFDANFTTMITAVVLYSIGNGPIQGFAL 589

Query: 583 TLSIGILTSMFTAIVGTRCIVNLLYG 608
           TL +G+LTSMFT I  +R ++NL+YG
Sbjct: 590 TLGLGLLTSMFTGIFASRALINLVYG 615