Pairwise Alignments

Query, 433 a.a., two-component system sensor histidine kinase PhoR from Vibrio cholerae E7946 ATCC 55056

Subject, 803 a.a., PAS domain S-box from Pseudomonas stutzeri RCH2

 Score =  119 bits (297), Expect = 5e-31
 Identities = 106/425 (24%), Positives = 191/425 (44%), Gaps = 54/425 (12%)

Query: 45  WHLNHQIR--LSAWLWDEKRLTP---PSGTGNWESLFNGIY--RLQQRHRKKRKELTNLI 97
           WH+ H++       +W E R TP     G+  W      I   + +Q   ++++E+    
Sbjct: 393 WHIEHRVEHPRKGLIWVEARATPLQQVDGSVLWHGFVTDITVRKAEQLELERQQEMN--- 449

Query: 98  RRFRNGAESLPDAVVVFRSEGNIVWCNRLAQHLLGFRW----PDDAGQPISNLLRTPDFI 153
              R   E+L +AV+   ++G +   N  A+   G       PD+   P    L  PD +
Sbjct: 450 ---RRLLEALSEAVIACDADGCLTLFNEKAKQWHGTDVAPVPPDE--WPTRYQLYHPDGV 504

Query: 154 KYLKKDDFTDPLEMRSPLNSDRMLELRIVPYTEGE--HLM------------------VV 193
             L+ ++    + +   L+ + + +  +V   +GE  H++                  V+
Sbjct: 505 TPLRPEE----IPLLRALHGEHVCDHEMVLLGQGEPRHVLSNADPLYTSDGQPMGAVAVL 560

Query: 194 RDVTQLKQLEGMRRNFFANVSHELRTPMTVLQGYLE------MTEDPDVLAGPMWSKAHG 247
            D+T+ K++E ++R F + VSHELRTP+T + G L       M E P+ +      +   
Sbjct: 561 HDITERKRIERLQREFISTVSHELRTPLTSITGALGLICSNVMGEVPEAM-----HELLD 615

Query: 248 VMTEQLNRMNGLVNQLLTLSKIEASPMVELDQVVDVPAMLEVLEKEAVSLSGEAQHKLHF 307
           +  +   R+N L++ LL + K+ A  M        +   LE+  +   + + +    L  
Sbjct: 616 IAQQNSQRLNALIDDLLDMDKLHAGKMRFALLRQPLQPQLELALRSNRNYAEQHGVVLQL 675

Query: 308 EVDKSLKVLADEDQLRSAISNLVYNAVKYTPPGAQIDVRWYRTGKGACLEVEDKGEGIEP 367
               ++ V  D  +L+  +SNL+ NA K++P G Q+++    +     + V D+G GI  
Sbjct: 676 GACPAVTVEIDAMRLQQVLSNLLSNAAKFSPAGEQVELSATLSDGRVRISVRDRGPGISA 735

Query: 368 QHLHRLTERFYRVDKARSRDTGGSGLGLAIVKHALAHHDTHLDIYSKVGVGSKFSFVLPK 427
               R+ ++F + D + SR  GG+GLGLAI K  +      +   S+ G G+ F F LP 
Sbjct: 736 DFRERVFQKFAQADSSDSRQQGGTGLGLAISKELIERMGGQIGFESEPGHGACFWFELPS 795

Query: 428 RLVAK 432
             +AK
Sbjct: 796 EGLAK 800