Pairwise Alignments

Query, 433 a.a., two-component system sensor histidine kinase PhoR from Vibrio cholerae E7946 ATCC 55056

Subject, 1239 a.a., PAS domain S-box from Pseudomonas stutzeri RCH2

 Score =  107 bits (268), Expect = 2e-27
 Identities = 114/408 (27%), Positives = 185/408 (45%), Gaps = 77/408 (18%)

Query: 73  ESLFNGIYRLQQRHRKKRKELTNLIRRFRNGAESLPDAVVVFRSEGNIVWCNRLAQHLLG 132
           ++L+  +  L  + RK+ +E      RFRN  E+ P+A V+    G+IV  NR  + L G
Sbjct: 448 DALYYVLNLLDLQARKRDEE------RFRNVVEASPNAFVLVDVHGDIVMVNRQTEVLFG 501

Query: 133 FRWPDDAGQPISNLLRTPDFIKYLKK---DDFTDPLEMRSPLNSDRML------------ 177
           +   +  GQP+  LL  P+ ++   +     +T+  E R  + S+R L            
Sbjct: 502 YTRQELLGQPVEQLL--PEALREAHRGLRQGYTEHPEPRR-MGSNRELFGLHRDGSALPV 558

Query: 178 ELRIVPYTEGEHLMV---VRDVTQLKQLEGMRRN--------------FFANVSHELRTP 220
           E+ + P   G+  +V   + D++  K  E   R               F AN+SHELRTP
Sbjct: 559 EIGLSPLRSGDEQLVQAVIIDISHRKAAERRLREQADQLAVANRYKSEFLANMSHELRTP 618

Query: 221 MTVLQGYLEMTEDPDVLAGPMWSKAHGVMTEQLNR-----------MNGLVNQLLTLSKI 269
           +  +           +L+  +     G + E+  R           +  L+N +L L+KI
Sbjct: 619 LNSIL----------ILSDQLRQNGAGNLNEKQVRHADIIHRAGHELLQLINDVLDLAKI 668

Query: 270 EASPMVELDQVVDVPAML-EVLEKEAVSLSGEAQHK---LHFEVDKSLKVLADEDQ--LR 323
           E+  M    Q+   P  L E+L ++  SL   A+ K   L  EVD  + V  + D+  L+
Sbjct: 669 ESGHM----QLKLEPLNLREMLTEQQTSLGPMAEQKGLLLKIEVDADVPVTLNSDRARLQ 724

Query: 324 SAISNLVYNAVKYTPPGAQ---IDVRWYRTGKGACLE--VEDKGEGIEPQHLHRLTERFY 378
             + NL+ NA+K+T  G        R    G G  L+  V D G GI      R+ + F 
Sbjct: 725 QILRNLLTNALKFTEQGEVELLASCRSAEDGSGQTLQLQVRDSGIGIAKDQHERIFQAFQ 784

Query: 379 RVDKARSRDTGGSGLGLAIVKHALAHHDTHLDIYSKVGVGSKFSFVLP 426
           ++D + SR  GG+GLGLAI +  +      + + S++G G+ F+ VLP
Sbjct: 785 QIDGSISRHYGGTGLGLAITRQLVEVLGGQVTVESELGQGATFTVVLP 832



 Score = 28.1 bits (61), Expect = 0.002
 Identities = 33/138 (23%), Positives = 59/138 (42%), Gaps = 5/138 (3%)

Query: 75  LFNGIYRLQQRHRKKRKELTNLIR----RFRNGAESLPDAVVVFRSEGNIVWCNRLAQHL 130
           L  G   L++R  +  + L+  ++    RFR   E LP A ++  + G I   N+ A  L
Sbjct: 329 LVGGYLYLRERALRNSQALSLQLQEREARFRQLIEQLPVATLLCNAGGRIELANQSAAQL 388

Query: 131 LGFRWPDDAGQPISNLLRTPDFIKYLKKDDFTDPLEMRSPLNSDRMLELRIVPYTEGEHL 190
            G      AG+ +S  +      + L++   T  LE+++     R + +  V  T   H 
Sbjct: 389 FGSTAELLAGERVSRYVPGVLGEQILRQLRETSQLELQAQREDGRPIPV-AVSLTSFNHD 447

Query: 191 MVVRDVTQLKQLEGMRRN 208
             +  V  L  L+  +R+
Sbjct: 448 DALYYVLNLLDLQARKRD 465