Pairwise Alignments

Query, 466 a.a., U32 family peptidase from Vibrio cholerae E7946 ATCC 55056

Subject, 609 a.a., putative collagenase (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  144 bits (362), Expect = 1e-38
 Identities = 115/415 (27%), Positives = 175/415 (42%), Gaps = 81/415 (19%)

Query: 10  ELLSPAGSLKNMRYAFAYGADAVYAGQPRYSLRVRNNEFNHENLQIGINEAHALGKKFYV 69
           ELL+PA +L+    A  +GADAVY G P++  R      + E+++  +  AH    + YV
Sbjct: 8   ELLAPAKNLECGIEAINHGADAVYIGAPKFGARAAAVN-SLEDIEALVKHAHLYNARIYV 66

Query: 70  VCNIQPHNSKLKTFIRDLKPVIDMGPDALIMSDPGLIMMVREEFPHMPIHLSVQANAVNW 129
             N      +LK     +  +  +G DALI+ D G+  +     P +P+H S Q +    
Sbjct: 67  TVNTILKEEELKETEEMIHALYRVGVDALIVQDMGITKL---NLPPIPLHASTQMDNRTP 123

Query: 130 ATVKFWASQGVERVIVSRELSLEEIEEIREKCPNTEIEVFVHGALCMAYSGRCLLSGYIN 189
             VKF    G  +V+++RELS+ EI +I E CP   +EVFVHGALC++YSG+C +S    
Sbjct: 124 EKVKFLWEAGFRQVVLARELSIREIRKIHEICPEVPLEVFVHGALCVSYSGQCYVSQACF 183

Query: 190 KRDPNQGTCTNACRWEYKVEAAKEDEAGQIVEQFDPNAAQAIEVQNERPDTTIGAGKPID 249
            R  N+G C   CR  + +     D  G+++                             
Sbjct: 184 GRSANRGECAQFCRLPFSL----VDSEGKVI----------------------------- 210

Query: 250 DVVLLSESHRPDEKMAAFEDEHGTYIMNSKDLRAVQHVERLTQMGVHSLKIEGRTKSFYY 309
                             +D+H   +++ KD+     +ERL   G  S KIEGR K   Y
Sbjct: 211 -----------------VKDKH---LLSLKDMNQSDELERLLDAGASSFKIEGRLKDVSY 250

Query: 310 CARTAQVYRKAIDDAVAGKP-----------FDDSLMTTLESLAHRGYTEGFLRRHTHDA 358
                  YR+ +D   A +P           FD      L+    RG+T  FL   + D 
Sbjct: 251 VKNVTAAYRQKLDAIFARRPEYVRASSGTCRFD--FKPQLDKSFSRGFTHYFLHGRSEDI 308

Query: 359 YQNYDYGYSVSDTQQFVGEFTG---KRRGAMAEVEVKNKFVLGDSLELMTPKGNV 410
           +          DT + +GE  G   + RG    V     F  GD +  +  +G +
Sbjct: 309 FS--------FDTPKSLGEEMGTMKEARGNFLTVAGLKSFNNGDGVCYIDEQGRL 355