Pairwise Alignments

Query, 857 a.a., chaperone protein ClpB from Vibrio cholerae E7946 ATCC 55056

Subject, 868 a.a., ATP-dependent protease from Sinorhizobium meliloti 1021

 Score =  951 bits (2459), Expect = 0.0
 Identities = 489/849 (57%), Positives = 634/849 (74%), Gaps = 8/849 (0%)

Query: 1   MRLDRFTSKFQIAISDAQSLALGRDHQYIEPVHLMVALLDQNGSPIRPLLTMLNVDVMQL 60
           M +++++ + +  +  AQ+ AL   HQ   P H++  LLD +      L+     +  + 
Sbjct: 1   MDIEKYSERVRGFLQSAQTYALAEGHQQFTPEHVLKVLLDDDQGMAASLIERAGGNAREA 60

Query: 61  RSKLGEMLDRLPKVSGIGGDVQLSSALGSLFNLCDKVAQKRQDAYISSEIYLLA-AIEDK 119
           +      L +LPKV+G  G V LS  L  +F   +  A+K  D++++ E  LLA AIE  
Sbjct: 61  KVGTAAALAKLPKVTGGNGSVYLSQPLAKVFTAAEDAAKKAGDSFVTVERLLLALAIESS 120

Query: 120 GPLGHLLKEFGLTEKKVSEAIEKIRGGQKVNDPNAEELRQALEKFTIDLTERAEQGKLDP 179
                +L + G+T  K+++ I +IR G+  +  NAE+   +L+K+  DLT  A +GKLDP
Sbjct: 121 AATASILSKAGVTPTKLNQVINEIRKGRTADSANAEQGFDSLKKYARDLTAEAREGKLDP 180

Query: 180 VIGRDDEIRRTIQVLQRRTKNNPVIIGEPGVGKTAIVEGLAQRIINNEVPEGLRGRRVLS 239
           VIGRDDEIRRTIQVL RRTKNNPV+IGEPGVGKTAI EGLA RI+N +VPE L+ +R+++
Sbjct: 181 VIGRDDEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIAEGLALRIVNGDVPESLKDKRLMA 240

Query: 240 LDMGALVAGAKYRGEFEERLKSVLNELAKEEGNIILFIDELHTMVGAGKGEGSMDAGNML 299
           LDMGAL+AGAK+RGEFEERLK+VLNE+  E G IILFIDE+HT+VGAGK +G+MDA N+L
Sbjct: 241 LDMGALIAGAKFRGEFEERLKAVLNEVRSEGGEIILFIDEMHTLVGAGKADGAMDASNLL 300

Query: 300 KPALARGELHCVGATTLDEYRQYIEKDPALERRFQKVLVDEPTVEDTIAILRGLKERYEL 359
           KPALARGELHCVGATTLDEYR+++EKD AL RRFQ V+V+EPTVEDTI+ILRGLKE+YE 
Sbjct: 301 KPALARGELHCVGATTLDEYRKHVEKDAALARRFQPVMVEEPTVEDTISILRGLKEKYEQ 360

Query: 360 HHHVEITDPAIVAAASLSHRYISDRQLPDKAIDLIDEAASSIRMQIDSKPEALDKLERKI 419
           HH V I+D A+VAAA+LS+RYI+DR LPDKAIDL+DEAAS +RMQ+DSKPE LD+L+R++
Sbjct: 361 HHKVRISDSALVAAAALSNRYITDRFLPDKAIDLMDEAASRLRMQVDSKPEELDELDRRV 420

Query: 420 IQLKIEQQALSNEHDEASEKRLAILNEELQEKERDYAELEEVWKAEKAALSGTQHIKAAL 479
           IQLKIE++AL  E D +S+ RLA L  +L   E + A L   W+AEK  L     +K  L
Sbjct: 421 IQLKIEREALKKETDVSSKDRLAKLELDLSSLEEEAAALTARWQAEKQKLGQAADLKKQL 480

Query: 480 EQARMDLEVARRAGDLNRMSELQYGRIPELEKQLDLAAQAEMQE----MTLLRNKVTDAE 535
           ++AR +L++A+R G+  R  EL YG IP LEK+L   A+AE Q+      +++  VT   
Sbjct: 481 DEARNELQIAQRKGEFQRAGELAYGVIPNLEKEL---AEAESQDGASANPMVQEVVTPDN 537

Query: 536 IAEVLSKQTGIPVSKMLEAEKEKLLRMEDVLHKRVIGQKEAVEVVANAIRRSRAGLSDPN 595
           IA ++S+ TGIPV KMLE E++KLLRMED L K V+GQ +AV+ V+ A+RRSRAGL DPN
Sbjct: 538 IAHIVSRWTGIPVDKMLEGERDKLLRMEDELAKWVVGQGDAVQAVSRAVRRSRAGLQDPN 597

Query: 596 RPIGSFLFLGPTGVGKTELCKTLANFLFDSEDAMVRVDMSEFMEKHSVARLVGAPPGYVG 655
           RPIGSF+FLGPTGVGKTEL K LA FLFD E A++R+DMSE+MEKHSVARL+GAPPGYVG
Sbjct: 598 RPIGSFIFLGPTGVGKTELTKALARFLFDDETALMRIDMSEYMEKHSVARLIGAPPGYVG 657

Query: 656 YEEGGYLTEAVRRKPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVI 715
           YEEGG LTE+VRR+PY V+L DE+EKAHPDVFN+LLQVLDDGRLTDGQGRTVDF+NT++I
Sbjct: 658 YEEGGALTESVRRRPYQVVLFDEIEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFKNTMII 717

Query: 716 MTSNLGSSRIQENFARLDYQGIKEQVMDVVSKHFRPEFLNRVDESVVFHPLGQEHIKSIA 775
           MTSNLG+  +       D   +++QVM+VV   FRPEFLNRVDE ++FH L +  + +I 
Sbjct: 718 MTSNLGAEYLTALGENEDSDAVRDQVMEVVRAAFRPEFLNRVDEIILFHRLRRSEMGAIV 777

Query: 776 SIQLARLRQRLAERDYQLEVDDEALDLIAHVGFDPVYGARPLKRAIQQNVENPLAKSILA 835
            IQL RLR+ L++R   LE++D+A   +A  G+DP YGARPLKRAIQ+ V++PLA+ +L 
Sbjct: 778 DIQLERLRKLLSDRKITLELEDDARVFLADRGYDPAYGARPLKRAIQKYVQDPLAEKVLQ 837

Query: 836 GKFLPGSPI 844
           G+F  GS I
Sbjct: 838 GEFPDGSVI 846