Pairwise Alignments

Query, 857 a.a., chaperone protein ClpB from Vibrio cholerae E7946 ATCC 55056

Subject, 879 a.a., ATP-dependent chaperone ClpB from Rhodopseudomonas palustris CGA009

 Score =  950 bits (2455), Expect = 0.0
 Identities = 490/853 (57%), Positives = 625/853 (73%), Gaps = 3/853 (0%)

Query: 1   MRLDRFTSKFQIAISDAQSLALGRDHQYIEPVHLMVALLDQNGSPIRPLLTMLNVDVMQL 60
           M ++++T + +  I  AQSLA+   HQ   P+H++  LLD +      L+     +   +
Sbjct: 1   MNVEKYTERVRGFIQSAQSLAMREGHQQFSPLHILKVLLDDSEGLAGGLIDRAGGNSRAI 60

Query: 61  RSKLGEMLDRLPKVSGIG-GDVQLSSALGSLFNLCDKVAQKRQDAYISSEIYLLAAIEDK 119
                E L ++PKVSG G G V L+ A    F+  +K A+K  D++++ E  LLA   DK
Sbjct: 61  LKATEEALGKMPKVSGSGAGQVYLAPATARAFDAAEKAAEKAGDSFVTVERLLLALSLDK 120

Query: 120 -GPLGHLLKEFGLTEKKVSEAIEKIRGGQKVNDPNAEELRQALEKFTIDLTERAEQGKLD 178
               G LL + G+T + ++ AI  +R G+  +   AE    AL+K+  DLT+ A  GKLD
Sbjct: 121 DSEAGQLLTKGGVTPQNLNAAINALRKGRTADSATAENAYDALKKYARDLTQAARDGKLD 180

Query: 179 PVIGRDDEIRRTIQVLQRRTKNNPVIIGEPGVGKTAIVEGLAQRIINNEVPEGLRGRRVL 238
           PVIGRD+EIRRTIQVL RRTKNNPV+IGEPGVGKTAIVEGLA RI+N +VPE L+ +++L
Sbjct: 181 PVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLALRILNGDVPESLKDKKLL 240

Query: 239 SLDMGALVAGAKYRGEFEERLKSVLNELAKEEGNIILFIDELHTMVGAGKGEGSMDAGNM 298
           +LDMGAL+AGAKYRGEFEERLK+VLNE+   EG IILFIDE+HT+VGAGK +G+MDA N+
Sbjct: 241 ALDMGALIAGAKYRGEFEERLKAVLNEVTAAEGGIILFIDEMHTLVGAGKADGAMDASNL 300

Query: 299 LKPALARGELHCVGATTLDEYRQYIEKDPALERRFQKVLVDEPTVEDTIAILRGLKERYE 358
           LKPALARGELHC+GATTLDEYR+++EKD AL RRFQ V V EPTVEDT++ILRGLK++YE
Sbjct: 301 LKPALARGELHCIGATTLDEYRKHVEKDAALARRFQPVFVSEPTVEDTVSILRGLKDKYE 360

Query: 359 LHHHVEITDPAIVAAASLSHRYISDRQLPDKAIDLIDEAASSIRMQIDSKPEALDKLERK 418
            HH V I D A+VAA +LS+RYI+DR LPDKAIDL+DEAA+ ++MQ+DSKPE LD ++R+
Sbjct: 361 QHHGVRIADSALVAAVTLSNRYITDRFLPDKAIDLMDEAAARLKMQVDSKPEELDSMDRE 420

Query: 419 IIQLKIEQQALSNEHDEASEKRLAILNEELQEKERDYAELEEVWKAEKAALSGTQHIKAA 478
           I++LKIEQ+AL  E D  S+ RL  L +EL + E   A L + W AEK  LS  Q +K+ 
Sbjct: 421 IVRLKIEQEALKKETDPGSKARLVTLEKELADLEEKSAALTQRWSAEKNKLSDAQKLKSE 480

Query: 479 LEQARMDLEVARRAGDLNRMSELQYGRIPELEKQLDLAAQAEMQEMTLLRNKVTDAEIAE 538
           L+  R++L  A+R G+  R  EL YGRIPELEK++    +A      ++   VT   IA+
Sbjct: 481 LDALRIELANAQRRGEYQRAGELAYGRIPELEKKI-AEIEANENSGAMVEEAVTANHIAQ 539

Query: 539 VLSKQTGIPVSKMLEAEKEKLLRMEDVLHKRVIGQKEAVEVVANAIRRSRAGLSDPNRPI 598
           V+S+ TG+PV KMLE EKEKLLRME+ L +RV+GQ EAV  V+ A+RR+RAGL DPNRP+
Sbjct: 540 VVSRWTGVPVDKMLEGEKEKLLRMEEQLGQRVVGQFEAVHAVSTAVRRARAGLQDPNRPM 599

Query: 599 GSFLFLGPTGVGKTELCKTLANFLFDSEDAMVRVDMSEFMEKHSVARLVGAPPGYVGYEE 658
           GSF+FLGPTGVGKTEL K LA +LFD E AMVR+DMSEFMEKHSVARL+GAPPGYVGY+E
Sbjct: 600 GSFMFLGPTGVGKTELTKALAEYLFDDETAMVRIDMSEFMEKHSVARLIGAPPGYVGYDE 659

Query: 659 GGYLTEAVRRKPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTS 718
           GG LTEAVRR+PY VIL DE+EKAHPDVFN+LLQVLDDGRLTDGQGRTVDFRNT+++MTS
Sbjct: 660 GGVLTEAVRRRPYQVILFDEIEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTLIVMTS 719

Query: 719 NLGSSRIQENFARLDYQGIKEQVMDVVSKHFRPEFLNRVDESVVFHPLGQEHIKSIASIQ 778
           NLGS  +       D   ++EQVM +V  HFRPEFLNRVDE ++FH L +  +  I  IQ
Sbjct: 720 NLGSEYLVNQPEGEDTGAVREQVMGMVRAHFRPEFLNRVDEIILFHRLQKSEMGRIVDIQ 779

Query: 779 LARLRQRLAERDYQLEVDDEALDLIAHVGFDPVYGARPLKRAIQQNVENPLAKSILAGKF 838
            ARL + L +R   L++D  A D +A  G+DP YGARPLKR IQ++V++PLA+ IL G  
Sbjct: 780 FARLTKLLEDRKIVLDLDAAARDWLAEKGWDPAYGARPLKRVIQRSVQDPLAEMILEGSV 839

Query: 839 LPGSPILLSVKDG 851
             G  + +S + G
Sbjct: 840 KDGDHVAISAEGG 852