Pairwise Alignments

Query, 857 a.a., chaperone protein ClpB from Vibrio cholerae E7946 ATCC 55056

Subject, 857 a.a., ATPase (RefSeq) from Shewanella loihica PV-4

 Score = 1320 bits (3415), Expect = 0.0
 Identities = 671/853 (78%), Positives = 752/853 (88%)

Query: 1   MRLDRFTSKFQIAISDAQSLALGRDHQYIEPVHLMVALLDQNGSPIRPLLTMLNVDVMQL 60
           MRLDR T+KFQIAISDAQSLALGRDHQ+IEP+HLM+ALL+Q+G  I PLLT   + V  L
Sbjct: 1   MRLDRMTNKFQIAISDAQSLALGRDHQFIEPIHLMMALLNQDGGSIHPLLTQAGISVSTL 60

Query: 61  RSKLGEMLDRLPKVSGIGGDVQLSSALGSLFNLCDKVAQKRQDAYISSEIYLLAAIEDKG 120
           RS L + L+RLP++ G GGDVQLS AL  L NLCDK+AQKR+D YISSE+++LAA+E   
Sbjct: 61  RSALSQELERLPQIEGTGGDVQLSQALIRLLNLCDKLAQKRKDKYISSELFVLAALEGSD 120

Query: 121 PLGHLLKEFGLTEKKVSEAIEKIRGGQKVNDPNAEELRQALEKFTIDLTERAEQGKLDPV 180
            L   LK+ G T++ + + IE++R G+ ++DPNAE+ RQAL+KFT+DLTERAEQGKLDPV
Sbjct: 121 ALAQCLKKSGATKELLEKTIEEVRLGKNIDDPNAEDQRQALKKFTVDLTERAEQGKLDPV 180

Query: 181 IGRDDEIRRTIQVLQRRTKNNPVIIGEPGVGKTAIVEGLAQRIINNEVPEGLRGRRVLSL 240
           IGRDDEIRRTIQVLQRR+KNNPV+IGEPGVGKTAIVEGLAQRIIN EVPEG++ +RVLSL
Sbjct: 181 IGRDDEIRRTIQVLQRRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGIKNKRVLSL 240

Query: 241 DMGALVAGAKYRGEFEERLKSVLNELAKEEGNIILFIDELHTMVGAGKGEGSMDAGNMLK 300
           D+GALVAGAKYRGEFEERLK+VLNELA+EEG +ILFIDELHTMVGAGK +G+MDAGNMLK
Sbjct: 241 DLGALVAGAKYRGEFEERLKAVLNELAQEEGQVILFIDELHTMVGAGKSDGAMDAGNMLK 300

Query: 301 PALARGELHCVGATTLDEYRQYIEKDPALERRFQKVLVDEPTVEDTIAILRGLKERYELH 360
           PALARG+LHCVGATTLDEYRQYIEKD ALERRFQKVLVDEP+VEDTIAILRGLKERYELH
Sbjct: 301 PALARGDLHCVGATTLDEYRQYIEKDAALERRFQKVLVDEPSVEDTIAILRGLKERYELH 360

Query: 361 HHVEITDPAIVAAASLSHRYISDRQLPDKAIDLIDEAASSIRMQIDSKPEALDKLERKII 420
           HHVEITDPAIVAAAS+SHRYISDR+LPDKAIDLIDEAASSIRMQIDSKPE LD+LER+ I
Sbjct: 361 HHVEITDPAIVAAASMSHRYISDRKLPDKAIDLIDEAASSIRMQIDSKPEPLDRLERRTI 420

Query: 421 QLKIEQQALSNEHDEASEKRLAILNEELQEKERDYAELEEVWKAEKAALSGTQHIKAALE 480
           QLK+E+QALS E DEAS +RL+ L  EL E E   AEL EVW  EKAAL+GTQHIKA LE
Sbjct: 421 QLKLEEQALSKESDEASLRRLSTLRSELAEVEAKAAELNEVWHTEKAALAGTQHIKADLE 480

Query: 481 QARMDLEVARRAGDLNRMSELQYGRIPELEKQLDLAAQAEMQEMTLLRNKVTDAEIAEVL 540
           QARMDLEVARRAGDL RMSELQYGRIPELEKQLDLAAQAEMQ+MTLLRNKV+D EIAEVL
Sbjct: 481 QARMDLEVARRAGDLTRMSELQYGRIPELEKQLDLAAQAEMQDMTLLRNKVSDVEIAEVL 540

Query: 541 SKQTGIPVSKMLEAEKEKLLRMEDVLHKRVIGQKEAVEVVANAIRRSRAGLSDPNRPIGS 600
           SK TGIPVSKMLE EKEKLL ME+ LH RVIGQ EAV+ VANAIRRSRAGL+DPNRPIGS
Sbjct: 541 SKATGIPVSKMLEGEKEKLLHMEEALHTRVIGQNEAVDAVANAIRRSRAGLADPNRPIGS 600

Query: 601 FLFLGPTGVGKTELCKTLANFLFDSEDAMVRVDMSEFMEKHSVARLVGAPPGYVGYEEGG 660
           FLFLGPTGVGKTELCK+LA FLFD+E AMVR+DMSEFMEKHSV+RLVGAPPGYVGYEEGG
Sbjct: 601 FLFLGPTGVGKTELCKSLAKFLFDTEAAMVRIDMSEFMEKHSVSRLVGAPPGYVGYEEGG 660

Query: 661 YLTEAVRRKPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNL 720
           YLTEAVRRKPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRN+VVIMTSNL
Sbjct: 661 YLTEAVRRKPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNSVVIMTSNL 720

Query: 721 GSSRIQENFARLDYQGIKEQVMDVVSKHFRPEFLNRVDESVVFHPLGQEHIKSIASIQLA 780
           GS  IQE F    Y  +K +VM+VV+  FRPEFLNR+DESVVFHPL  EHI  IA IQ+ 
Sbjct: 721 GSDVIQERFGIASYAEMKSEVMNVVTHSFRPEFLNRIDESVVFHPLESEHIAHIAQIQID 780

Query: 781 RLRQRLAERDYQLEVDDEALDLIAHVGFDPVYGARPLKRAIQQNVENPLAKSILAGKFLP 840
            L+ RLAE+D++LEV D+AL LIA  GFDPVYGARPLKRA+QQ VENPLA+ +L+G+ LP
Sbjct: 781 NLKARLAEKDFELEVSDDALALIAQAGFDPVYGARPLKRALQQEVENPLAQKLLSGELLP 840

Query: 841 GSPILLSVKDGNI 853
           G+PI +    G +
Sbjct: 841 GAPIKVDAAGGEL 853