Pairwise Alignments

Query, 324 a.a., ribosomal large subunit pseudouridine synthase D from Vibrio cholerae E7946 ATCC 55056

Subject, 306 a.a., Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) from Pseudomonas fluorescens FW300-N2E2

 Score =  352 bits (904), Expect = e-102
 Identities = 174/299 (58%), Positives = 221/299 (73%), Gaps = 1/299 (0%)

Query: 17  GQRLDQAVAELFTDFSRSRLKEWLLEGKIAVNGDVITKPRTKVMGGEVITVQAELEDEQR 76
           GQRLDQ  A+LF + SRSRL  W+ +G++ V+G VI +PR  V GG ++ + AE E +  
Sbjct: 3   GQRLDQVAAQLFAEHSRSRLSAWIKDGRLTVDGAVI-RPRDIVHGGAILELTAEQEAQGE 61

Query: 77  WEAQDLPLNIVYEDDDIIVINKPRDFVVHPGAGQADKTVLNALLFHYSPIAEVPRAGIVH 136
           W AQD+ L+IVYED+DI+VINKP   VVHP AG AD T+LNALL H   I  VPRAGIVH
Sbjct: 62  WVAQDIALDIVYEDEDILVINKPAGLVVHPAAGHADGTLLNALLHHVPDIINVPRAGIVH 121

Query: 137 RLDKDTTGLMVVAKTVPAQTRLVRALQKRDVTREYEAIVIGTMTAGGMIDKPIGRHSTKR 196
           RLDKDTTGLMVVAKT+ AQT+LV  LQ R V+R YE IVIG +TAGG I+ PIGRH  +R
Sbjct: 122 RLDKDTTGLMVVAKTIQAQTQLVTQLQSRSVSRIYECIVIGVVTAGGKINAPIGRHGQQR 181

Query: 197 TLMSVSPMGKHAVTHYRVAEHFREHTRLRLRLETGRTHQIRVHMAYLQHPLLGDTAYGGR 256
             M+V   GK AV+HYRV E FR HT +R++LETGRTHQIRVHMA++  PL+GD AYGGR
Sbjct: 182 QRMAVMEGGKQAVSHYRVLERFRSHTHVRVKLETGRTHQIRVHMAHINFPLVGDPAYGGR 241

Query: 257 ARIPKGATEELTEMIRDFDRQALHAVMLKFEHPVTGEELEFHAPVPDDMVEMTLALRED 315
            RIP  A++ + E +++F RQALHA  L+ +HP TG+ + + +P+PDD V +   L++D
Sbjct: 242 FRIPPAASQTMVESLKNFPRQALHARFLELDHPTTGKRMSWESPLPDDFVWLLTLLKQD 300