Pairwise Alignments

Query, 324 a.a., ribosomal large subunit pseudouridine synthase D from Vibrio cholerae E7946 ATCC 55056

Subject, 375 a.a., pseudouridine synthase, RluA family from Pseudomonas stutzeri RCH2

 Score =  343 bits (879), Expect = 5e-99
 Identities = 172/299 (57%), Positives = 216/299 (72%), Gaps = 1/299 (0%)

Query: 17  GQRLDQAVAELFTDFSRSRLKEWLLEGKIAVNGDVITKPRTKVMGGEVITVQAELEDEQR 76
           GQRLDQ  A+LF++ SRSRL  W+ +G + V+G V+ +PR  V  G V+ + AE + +  
Sbjct: 72  GQRLDQVAAQLFSEHSRSRLAAWIKDGLLTVDGAVL-RPRDTVHAGAVLELNAEQQAQGE 130

Query: 77  WEAQDLPLNIVYEDDDIIVINKPRDFVVHPGAGQADKTVLNALLFHYSPIAEVPRAGIVH 136
           W AQD+PL IVYEDD I+VI+KP   VVHP AG AD T+LNALL H   +  VPRAGIVH
Sbjct: 131 WVAQDIPLEIVYEDDQILVIDKPAGLVVHPAAGHADGTLLNALLHHVPGLINVPRAGIVH 190

Query: 137 RLDKDTTGLMVVAKTVPAQTRLVRALQKRDVTREYEAIVIGTMTAGGMIDKPIGRHSTKR 196
           RLDKDTTGLMVVAKT+ AQTRLV  LQ R V+R YEAIVIG +  GG ID PIGRH  +R
Sbjct: 191 RLDKDTTGLMVVAKTLQAQTRLVEQLQARSVSRIYEAIVIGVIITGGTIDAPIGRHGQQR 250

Query: 197 TLMSVSPMGKHAVTHYRVAEHFREHTRLRLRLETGRTHQIRVHMAYLQHPLLGDTAYGGR 256
             M+V   GK AV+HYRV E FR HT +R++LETGRTHQIRVHM +L +PL+GD  Y GR
Sbjct: 251 QRMAVVEGGKPAVSHYRVLERFRSHTHVRVKLETGRTHQIRVHMPHLGYPLVGDPLYAGR 310

Query: 257 ARIPKGATEELTEMIRDFDRQALHAVMLKFEHPVTGEELEFHAPVPDDMVEMTLALRED 315
            RIP  A   L + +R+F RQALHA  L+ +HPVTG+ +++ +P+PDD V +   L++D
Sbjct: 311 FRIPPAANPTLVQTLREFPRQALHARFLELDHPVTGQRMKWESPLPDDFVWLLTLLQQD 369