Pairwise Alignments

Query, 324 a.a., ribosomal large subunit pseudouridine synthase D from Vibrio cholerae E7946 ATCC 55056

Subject, 211 a.a., pseudouridine synthase, RluA family from Pseudomonas stutzeri RCH2

 Score =  120 bits (302), Expect = 2e-32
 Identities = 78/221 (35%), Positives = 111/221 (50%), Gaps = 18/221 (8%)

Query: 84  LNIVYEDDDIIVINKPRDFVVHPGAGQADKTVLNALLFHYSPIAEVPRAGIVHRLDKDTT 143
           + IV++D  ++VINKP   +  PG  + ++  L   L         P A IVHRLD +T+
Sbjct: 6   IEIVHQDAALLVINKPTLLLSVPGRAEDNRDCLVTRLQENG----YPEARIVHRLDWETS 61

Query: 144 GLMVVAKTVPAQTRLVRALQKRDVTREYEAIVIGTMTA-GGMIDKPIGRHS-TKRTLMSV 201
           GL+V+A+       L R    R+  + Y A+  G      G ID P+     TK   +  
Sbjct: 62  GLIVLARDADTHRELSRQFHDRETEKAYTALCWGEPEQDSGSIDLPLRYDPPTKPRHVVD 121

Query: 202 SPMGKHAVTHYRVAEHFREHTRLRLRLETGRTHQIRVHMAYLQHPLLGDTAYGGRARIPK 261
             +GKHA+T +RV E   +++R+ L   TGR+HQ+RVHM  + HPLLGD  Y        
Sbjct: 122 HELGKHALTFWRVLERCGDYSRVELTPITGRSHQLRVHMLSIGHPLLGDRLYAHE----- 176

Query: 262 GATEELTEMIRDFDRQALHAVMLKFEHPVTGEELEFHAPVP 302
                  + ++  +R  LHA ML   HP TGE L F  P P
Sbjct: 177 -------QALQAHERLCLHASMLTLTHPQTGERLRFECPAP 210