Pairwise Alignments

Query, 324 a.a., ribosomal large subunit pseudouridine synthase D from Vibrio cholerae E7946 ATCC 55056

Subject, 317 a.a., pseudouridine synthase, RluA family from Pseudomonas stutzeri RCH2

 Score =  118 bits (295), Expect = 2e-31
 Identities = 101/307 (32%), Positives = 152/307 (49%), Gaps = 29/307 (9%)

Query: 17  GQRLDQAVAELFTDFSRSRLKEWLLEGKIAVNGDVITKPRTKVMGGEVITV-------QA 69
           GQR+D  +        ++ +   L +G++ VN   I KP  K+  G+++ V       + 
Sbjct: 22  GQRIDNFLRNQLKGVPKTLIYRILRKGEVRVNKGRI-KPEYKLQAGDLVRVPPLRLAERD 80

Query: 70  ELEDEQRWEAQDLPLNIVYEDDDIIVINKPRDFVVHPGAGQADKTVLNALLFHYSPIAEV 129
           E E   +   + L   IVYED  +IV+NKP    VH G+G +   +    L    P A+ 
Sbjct: 81  EPEPLAQGLLERLDKAIVYEDKALIVLNKPAGIAVHGGSGLSYGVI--EALRQLRPDAK- 137

Query: 130 PRAGIVHRLDKDTTGLMVVAKTVPAQTRLVRALQKRDVTREYEAIVIGTM-TAGGMIDKP 188
               +VHRLD+DT+GL++VAK       L +AL+   V + Y A+V G   T+   ++ P
Sbjct: 138 -ELELVHRLDRDTSGLLMVAKKRSMLRHLHQALRGDGVDKRYMALVRGRWETSKKQVNAP 196

Query: 189 IGRHSTK--RTLMSVSPMGKHAVTHYRVAEHFREH-TRLRLRLETGRTHQIRVHMAYLQH 245
           + +++ +    ++ V+  GK A+T + V   F E  T +  +  TGRTHQIRVH  +  H
Sbjct: 197 LLKNTLRSGERMVEVTEDGKEALTLFHVLRRFGEFATLVEAKPVTGRTHQIRVHARHAGH 256

Query: 246 PLLGDTAYGGRARIPKGATEELTEMIRDF--DRQALHAVMLKFEHPVTGEELEFHAPVPD 303
            + GD+ YG          EE T  IR+    R  LHA  L+   P  G EL   APV D
Sbjct: 257 SIAGDSKYG---------DEEFTREIRELGGKRLFLHAYALRVPLP-DGGELSLEAPV-D 305

Query: 304 DMVEMTL 310
           +M   TL
Sbjct: 306 EMWARTL 312