Pairwise Alignments

Query, 324 a.a., ribosomal large subunit pseudouridine synthase D from Vibrio cholerae E7946 ATCC 55056

Subject, 318 a.a., ribosomal large subunit pseudouridine synthase C from Pseudomonas syringae pv. syringae B728a

 Score =  116 bits (290), Expect = 8e-31
 Identities = 101/307 (32%), Positives = 148/307 (48%), Gaps = 29/307 (9%)

Query: 17  GQRLDQAVAELFTDFSRSRLKEWLLEGKIAVNGDVITKPRTKVMGGEVIT---VQAELED 73
           GQR+D  +        ++ +   L +G++ VN   I KP  K+  G+++    V+    D
Sbjct: 22  GQRIDNFLITYLKGVPKTLIYRILRKGEVRVNKGRI-KPEYKLQAGDIVRIPPVRVPERD 80

Query: 74  EQRWEAQDL----PLNIVYEDDDIIVINKPRDFVVHPGAGQADKTVLNALLFHYSPIAEV 129
           E    AQ L       IVYED  +IV+NKP    VH G+G +   +         P A+ 
Sbjct: 81  EPVPVAQALLQRLEAAIVYEDKALIVLNKPAGIAVHGGSGLSFGVI--EAFRQLRPDAK- 137

Query: 130 PRAGIVHRLDKDTTGLMVVAKTVPAQTRLVRALQKRDVTREYEAIVIGTM-TAGGMIDKP 188
               +VHRLD+DT+GL+++AK       L  AL+   V + Y A+V G   TA   +  P
Sbjct: 138 -ELELVHRLDRDTSGLLMIAKKRSMLRHLHEALRGDGVDKRYMALVRGNWATALKQVRAP 196

Query: 189 IGRHSTK--RTLMSVSPMGKHAVTHYRVAEHFREH-TRLRLRLETGRTHQIRVHMAYLQH 245
           + + + +    ++ V+  GK A+T ++V   F +  T +  +  TGRTHQIRVH  +  H
Sbjct: 197 LMKSNLRSGERMVEVNEEGKEALTIFKVLRRFGDFATMVEAKPVTGRTHQIRVHTLHAGH 256

Query: 246 PLLGDTAYGGRARIPKGATEELTEMIRDF--DRQALHAVMLKFEHPVTGEELEFHAPVPD 303
            + GDT YG          E  +  IRD    R  LHA ML    P  G +L   APV D
Sbjct: 257 AIAGDTKYG---------DENFSREIRDLGGKRLFLHAYMLTVPMP-DGSKLNVQAPV-D 305

Query: 304 DMVEMTL 310
           DM   T+
Sbjct: 306 DMWAKTV 312