Pairwise Alignments

Query, 324 a.a., ribosomal large subunit pseudouridine synthase D from Vibrio cholerae E7946 ATCC 55056

Subject, 320 a.a., ribosomal large subunit pseudouridine synthase D from Pseudomonas syringae pv. syringae B728a

 Score =  353 bits (905), Expect = e-102
 Identities = 177/315 (56%), Positives = 224/315 (71%), Gaps = 1/315 (0%)

Query: 1   MAHQIELTQTVKDSQLGQRLDQAVAELFTDFSRSRLKEWLLEGKIAVNGDVITKPRTKVM 60
           M+  IEL   V     GQRLDQ  A+LF + SRSRL  W+ +G++ V+G  + +PR  V 
Sbjct: 1   MSENIELRAEVPSELGGQRLDQVAAQLFAEHSRSRLSAWIKDGRLTVDGGAL-RPRDIVH 59

Query: 61  GGEVITVQAELEDEQRWEAQDLPLNIVYEDDDIIVINKPRDFVVHPGAGQADKTVLNALL 120
           GG V+ + AE E +  W AQD+ L+I+YEDD I+VINKP   VVHP AG AD T+LNALL
Sbjct: 60  GGAVLELIAEQEAQGEWVAQDIELDIIYEDDQILVINKPAGLVVHPAAGHADGTLLNALL 119

Query: 121 FHYSPIAEVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVRALQKRDVTREYEAIVIGTMT 180
            H   I  VPRAGIVHRLDKDTTGLMVVAKT+ AQT+LV  LQ R V+R YE IVIG +T
Sbjct: 120 HHVPDIINVPRAGIVHRLDKDTTGLMVVAKTIQAQTQLVTQLQSRSVSRIYECIVIGVVT 179

Query: 181 AGGMIDKPIGRHSTKRTLMSVSPMGKHAVTHYRVAEHFREHTRLRLRLETGRTHQIRVHM 240
           AGG ID PIGRH  +R  M+V   GK AV+HYRV E FR HT +R++LETGRTHQIRVHM
Sbjct: 180 AGGKIDAPIGRHGQQRQRMAVMEGGKQAVSHYRVLERFRSHTHVRVKLETGRTHQIRVHM 239

Query: 241 AYLQHPLLGDTAYGGRARIPKGATEELTEMIRDFDRQALHAVMLKFEHPVTGEELEFHAP 300
           A++ +PL+GD AYGGR RIP  A+  + + ++ F RQALHA  L+ +HP TG+ + + +P
Sbjct: 240 AHINYPLVGDPAYGGRFRIPPAASLTMVDSLKTFPRQALHARFLELDHPTTGKRMSWESP 299

Query: 301 VPDDMVEMTLALRED 315
           +PDD V +   L++D
Sbjct: 300 LPDDFVWLLSLLKQD 314