Pairwise Alignments

Query, 324 a.a., ribosomal large subunit pseudouridine synthase D from Vibrio cholerae E7946 ATCC 55056

Subject, 313 a.a., ribosomal large subunit pseudouridine synthase D from Synechococcus elongatus PCC 7942

 Score =  196 bits (499), Expect = 5e-55
 Identities = 119/320 (37%), Positives = 182/320 (56%), Gaps = 26/320 (8%)

Query: 4   QIELTQTVKDSQLGQRLDQAVAELFTDFSRSRLKEWLLEGKIAVNGDVITKPRTKVMGGE 63
           Q+E+T+   +     RLD+ +A+ +   SR+RL++ +  G++ VNG+V  + R +   G+
Sbjct: 6   QLEITEVPSE-----RLDRWLAQQWPHLSRARLQKLIAAGQLRVNGEVCDQKRWQPRLGD 60

Query: 64  VITVQAELEDEQRWEAQDLPLNIVYEDDDIIVINKPRDFVVHPGAGQADKTVLNALLFH- 122
            + ++    +      +++PL+I+YED D++++NK    VVHP AG    T+++ALL H 
Sbjct: 61  RLELEMPPTEAIALAPEEIPLDILYEDADLLIVNKAVGMVVHPAAGHDTGTLVHALLAHC 120

Query: 123 ---YSPIAEVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVRALQKRDVTREYEAIVIGT- 178
               + I    R GIVHRLDKDTTG MVVAKT  A   L   ++++   REY  +V G+ 
Sbjct: 121 GDSLTGIGGEQRPGIVHRLDKDTTGAMVVAKTEAALLSLQDQIRQKTAQREYLGVVFGSP 180

Query: 179 MTAGGMIDKPIGRHSTKRTLMSVSPM---GKHAVTHYRVAEHFREHTRLRLRLETGRTHQ 235
               G +++PIGRH   R  M+V P+   G+ A+TH++V E    +  L  RL TGRTHQ
Sbjct: 181 RQDSGQVEEPIGRHLRDRKRMAVVPIERGGRWALTHWQVRERLGNYALLHYRLATGRTHQ 240

Query: 236 IRVHMAYLQHPLLGDTAYG-GRARIPKGATEELTEMIRDFDRQALHAVMLKFEHPVTGEE 294
           IRVH  ++ HPL+GD  YG GR+            +  +   QALHA  L  +HP TGE 
Sbjct: 241 IRVHSHHMGHPLVGDPLYGNGRS------------LGVNLQGQALHAWRLSLQHPRTGEV 288

Query: 295 LEFHAPVPDDMVEMTLALRE 314
           +   AP+P +   +   LR+
Sbjct: 289 IAVEAPLPAEFQRLLRVLRD 308