Pairwise Alignments

Query, 324 a.a., ribosomal large subunit pseudouridine synthase D from Vibrio cholerae E7946 ATCC 55056

Subject, 330 a.a., ribosomal large subunit pseudouridine synthase C protein from Sinorhizobium meliloti 1021

 Score =  112 bits (279), Expect = 2e-29
 Identities = 98/339 (28%), Positives = 152/339 (44%), Gaps = 43/339 (12%)

Query: 11  VKDSQLGQRLDQAVAELFTDFSRSRLKEWLLEGKIAVNGDVITKPRTKVMGGEVITVQAE 70
           V   + G RLD+     F       L++ L  G+I V+G    K  T++  G+ I +   
Sbjct: 9   VDSDEAGMRLDRWFKVHFPGLGFGPLQKLLRSGQIRVDG-ARAKSDTRIQPGQTIRIPPL 67

Query: 71  LEDEQRWEAQDLPLN----------------IVYEDDDIIVINKPRDFVVHPGAGQADKT 114
             D +  EA+  P+                 +++ED  +IV+NKP    V  G+G  ++ 
Sbjct: 68  GVDPK--EAKSGPIGGRDLRQSPDGELLSRMVLHEDAKVIVLNKPAGLAVQGGSG-VNRH 124

Query: 115 VLNALLFHYSPIAEVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVRALQKRDVTREYEAI 174
           +   L    S   E PR  +VHRLD+DT+G++VVA+T  A  +L  A ++RD  + Y A+
Sbjct: 125 IDKMLEAWTSQKGEKPR--LVHRLDRDTSGVLVVARTRGAAQQLTAAFRERDTKKTYWAL 182

Query: 175 VIGT------MTAGGMIDKPIGRHSTKRTLMSVSPMGKHAVTHYRVAEHFREHTR-LRLR 227
           V G         +  ++ +P       R          HA+++YR+ E   ++   L + 
Sbjct: 183 VRGVPRKREDKISTWLVKEPTPDGDRVRIAKHGEDGADHAISYYRIVEQAGQNLAWLEME 242

Query: 228 LETGRTHQIRVHMAYLQHPLLGDTAY---GGRARIPKGATEELTEMIRDFDRQALHAVML 284
             TGRTHQ+RVH A++ HP++GD  Y         P G            +R  LHA  +
Sbjct: 243 PYTGRTHQLRVHAAHIGHPIIGDPKYFEADVNWTFPGGMQ----------NRLHLHARHI 292

Query: 285 KFEHPVTGEELEFHAPVPDDMVEMTLALREDAKLNRTEE 323
              HP  G  L+  AP+P  MV+    L  D      EE
Sbjct: 293 DIPHP-NGGRLKITAPLPQHMVQSWNLLGFDENAAGEEE 330