Pairwise Alignments

Query, 324 a.a., ribosomal large subunit pseudouridine synthase D from Vibrio cholerae E7946 ATCC 55056

Subject, 343 a.a., ribosomal large subunit pseudouridine synthase from Sinorhizobium meliloti 1021

 Score =  219 bits (557), Expect = 1e-61
 Identities = 137/328 (41%), Positives = 183/328 (55%), Gaps = 22/328 (6%)

Query: 10  TVKDSQLGQRLDQAVAE-LFTDFSRSRLKEWLLEGKIAVNGDVITKPRTKVMGGEVITVQ 68
           T  D   G RLD  + E L  +FSR+R+K  + +G +++NG  +T+P+ KV  G+   + 
Sbjct: 16  TAGDDAAG-RLDAFLTEALAGEFSRNRIKSLIEQGAVSINGATVTEPKRKVHPGDSFRIA 74

Query: 69  AELEDEQRWEAQDLPLNIVYEDDDIIVINKPRDFVVHPGAGQADKTVLNALLFH----YS 124
               ++   + + +PL+++YED D+IV+ KP   VVHPGAG    T++NAL+ H     S
Sbjct: 75  LPEPEDPEPKGEAIPLDVLYEDADLIVLVKPAGLVVHPGAGNWTGTLVNALIHHCGDSLS 134

Query: 125 PIAEVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVRAL----QKRDVTREYEAIVIG-TM 179
            I  V R GIVHRLDKDT+G+MVVAK   A   L        +   + R Y A+V G   
Sbjct: 135 GIGGVKRPGIVHRLDKDTSGVMVVAKNDAAHRHLSDQFADHGRNGPLERAYRAVVWGRPR 194

Query: 180 TAGGMIDKPIGR--HSTKRTL-MSVSPMGKHAVTHYRVAEHFREH-------TRLRLRLE 229
              G ID P+GR    TKR +    S   + A+THY V E + E        + +   LE
Sbjct: 195 QLKGKIDAPLGRAGDRTKRAVKREDSDDAREAITHYEVVERYHEKPDGTSLASTVECHLE 254

Query: 230 TGRTHQIRVHMAYLQHPLLGDTAYGGRARIPKG-ATEELTEMIRDFDRQALHAVMLKFEH 288
           TGRTHQIRVHMA++ HPL+GD  YG   R       E     +  F RQALHA ML+FEH
Sbjct: 255 TGRTHQIRVHMAHIGHPLIGDPDYGAAFRTKANLLPEPARAAVNRFPRQALHAFMLQFEH 314

Query: 289 PVTGEELEFHAPVPDDMVEMTLALREDA 316
           P TGE + F  PVP DM E+  ALR  A
Sbjct: 315 PATGETMHFETPVPADMQELIAALRAGA 342