Pairwise Alignments

Query, 324 a.a., ribosomal large subunit pseudouridine synthase D from Vibrio cholerae E7946 ATCC 55056

Subject, 324 a.a., pseudouridylate synthase (RefSeq) from Shewanella amazonensis SB2B

 Score =  404 bits (1038), Expect = e-117
 Identities = 202/319 (63%), Positives = 247/319 (77%)

Query: 1   MAHQIELTQTVKDSQLGQRLDQAVAELFTDFSRSRLKEWLLEGKIAVNGDVITKPRTKVM 60
           M  +I L   +  +Q G RLDQA+AELF D+SR+RLKEW+L G + V+G V+TKPR KV+
Sbjct: 1   MTQEINLKSEISATQTGLRLDQAIAELFPDYSRTRLKEWILGGNVYVDGVVVTKPREKVL 60

Query: 61  GGEVITVQAELEDEQRWEAQDLPLNIVYEDDDIIVINKPRDFVVHPGAGQADKTVLNALL 120
             +VI ++A LE+E   EAQ++ L+IVYEDD I+VINK    VVHPGAG AD T++NALL
Sbjct: 61  ESQVIEIEATLEEEVAAEAQEIDLDIVYEDDHILVINKQAGLVVHPGAGNADGTLMNALL 120

Query: 121 FHYSPIAEVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVRALQKRDVTREYEAIVIGTMT 180
            H   I  VPRAGI+HRLDKDTTGLMVVAKTV AQT LV ALQ RD+TREYEAIV+GTMT
Sbjct: 121 HHCPEIEHVPRAGIIHRLDKDTTGLMVVAKTVEAQTHLVAALQARDITREYEAIVLGTMT 180

Query: 181 AGGMIDKPIGRHSTKRTLMSVSPMGKHAVTHYRVAEHFREHTRLRLRLETGRTHQIRVHM 240
           AGG +D PIGRH TKRT M+V   G+ +VTHYRVAE FR HTRLRLRLETGRTHQIRVHM
Sbjct: 181 AGGTVDAPIGRHPTKRTHMAVHHSGRPSVTHYRVAEKFRAHTRLRLRLETGRTHQIRVHM 240

Query: 241 AYLQHPLLGDTAYGGRARIPKGATEELTEMIRDFDRQALHAVMLKFEHPVTGEELEFHAP 300
           A++ H L+GD  YGGR + PK A+ E  E++++F RQALHAV L+  HPVT E + F+AP
Sbjct: 241 AHIGHVLVGDPVYGGRPKPPKNASPEFFEVLKNFTRQALHAVRLELAHPVTMEIMSFNAP 300

Query: 301 VPDDMVEMTLALREDAKLN 319
           +P+DMV +T ALR+D + N
Sbjct: 301 IPEDMVLLTKALRKDTEAN 319