Pairwise Alignments

Query, 324 a.a., ribosomal large subunit pseudouridine synthase D from Vibrio cholerae E7946 ATCC 55056

Subject, 224 a.a., pseudouridylate synthase (RefSeq) from Shewanella amazonensis SB2B

 Score =  129 bits (323), Expect = 9e-35
 Identities = 84/222 (37%), Positives = 114/222 (51%), Gaps = 15/222 (6%)

Query: 84  LNIVYEDDDIIVINKPRDFVVHPG-AGQADKTVLNALLFHYSPIAEVPRAGIVHRLDKDT 142
           L+I Y D D+I+INKP   + +PG A     + +  L   Y      P A +VHRLD  T
Sbjct: 14  LDIRYIDRDLIIINKPSGLLSNPGMAAHTHDSAITRLCRLY------PEAILVHRLDCAT 67

Query: 143 TGLMVVAKTVPAQTRLVRALQKRDVTREYEAIVIGTMTAG-GMIDKPIGRHSTKRTLMSV 201
           +G+MV A++  A++ L    Q RD  + Y A V G +    G ID P+G+  +      V
Sbjct: 68  SGIMVFARSKKAESNLKTQFQNRDTEKRYLAQVAGIIEQDEGTIDLPLGKDRSNPPWQKV 127

Query: 202 SPM-GKHAVTHYRVAEHFREHTRLRLRLETGRTHQIRVHMAYLQHPLLGDTAYGGRARIP 260
               G+ AVTHYRV       T + L  ETGRTHQ+RVHM  L HP+LGD  YG      
Sbjct: 128 DMAEGRPAVTHYRVLARRENSTLVALEPETGRTHQLRVHMLSLGHPILGDDFYGRTQEFG 187

Query: 261 KGATEELTEMIRDFDRQALHAVMLKFEHPVTGEELEFHAPVP 302
           +G  EE +       R  LHA  L F+HP + + + F +  P
Sbjct: 188 QGTVEEAS------PRLCLHAERLSFKHPWSNKPMTFVSRAP 223