Pairwise Alignments

Query, 324 a.a., ribosomal large subunit pseudouridine synthase D from Vibrio cholerae E7946 ATCC 55056

Subject, 225 a.a., pseudouridylate synthase (RefSeq) from Shewanella amazonensis SB2B

 Score =  113 bits (282), Expect = 5e-30
 Identities = 79/221 (35%), Positives = 111/221 (50%), Gaps = 20/221 (9%)

Query: 84  LNIVYEDDDIIVINKPRDFVVHPGAGQADKTVLNALLFHYSPI-AEVPRAGIVHRLDKDT 142
           L+I+++D DIIVINKP   +  PG               +S I AE P + +VHRLD  T
Sbjct: 15  LDILHQDKDIIVINKPSGLLSVPGRDPIHHDSA------WSRIKAEHPNSQVVHRLDMAT 68

Query: 143 TGLMVVAKTVPAQTRLVRALQKRDVTREYEAIVIGTMTAGGMIDKPIGRHSTKRTLMSVS 202
           +G+MV A    A+  L R  + R+  + Y A V G + A   +D P+      R    V 
Sbjct: 69  SGVMVYALRKSAEVELKRQFRDRETHKTYFARVAGHVKANCSVDLPLICDWPNRPRQKVD 128

Query: 203 -PMGKHAVTHYRVAEHFREHTRLRLRLETGRTHQIRVHMAYLQHPLLGDTAYGGRARIPK 261
             +GK ++TH  V  + +  T ++L   TGR+HQ+RVHM  L HP+LGD  Y        
Sbjct: 129 HEIGKPSLTHVDVISYGKRSTLVKLTPITGRSHQLRVHMMALGHPILGDGFY-------- 180

Query: 262 GATEELTEMIRDFDRQALHAVMLKFEHPVTGEELEFHAPVP 302
              + L + +   DR  LHA  L F HP +GE + F   VP
Sbjct: 181 --ADPLAKSLA--DRLLLHAASLSFTHPYSGEAMTFSTEVP 217