Pairwise Alignments

Query, 324 a.a., ribosomal large subunit pseudouridine synthase D from Vibrio cholerae E7946 ATCC 55056

Subject, 330 a.a., Pseudouridine synthase, RluD (NCBI) from Rhodospirillum rubrum S1H

 Score =  118 bits (295), Expect = 2e-31
 Identities = 106/321 (33%), Positives = 148/321 (46%), Gaps = 38/321 (11%)

Query: 8   TQTVKDSQLGQRLDQAVAELFTDFSRSRLKEWLLEGKIAVNGDVITKPRTKVMGGEVITV 67
           T  V   + G RLD+     +   +  RL++ L  G+I V+G  + K   ++  G+ + V
Sbjct: 5   TVAVTQDEDGSRLDRWFKRRYPALTHGRLEKLLRTGQIRVDGKRV-KSGERLEAGQQVRV 63

Query: 68  QAELEDEQ---------------RWEAQDLPLNIVYEDDDIIVINKPRDFVVHPGAGQAD 112
              L DE                  E + L   I++ED  +IVINK     V  G G   
Sbjct: 64  PP-LGDEAPSPSSSGHAVPRPAAEGEIRALRRAILHEDAHLIVINKEAGLAVQGGTGTPH 122

Query: 113 KTVLNALLFHYSPIAEVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVRALQKRDVTREYE 172
              L+ +L   +   E PR  +VHRLDKDT+G++V+A+T  A   L  A + R+  + Y 
Sbjct: 123 H--LDGMLESLADGGETPR--LVHRLDKDTSGVLVLARTQAAARALTSAFRSREALKVYW 178

Query: 173 AIVIGTM-----TAGGMIDKPIGRHSTKRTLMSVSPMGKHAVTHYRVAEHFREHTR-LRL 226
           AIV+G       T  G + K  G    +  +      GK AVT +RV +   +    + L
Sbjct: 179 AIVVGRPPMLQGTIKGALAKVAGGRGERMEINEEE--GKRAVTDFRVVDQAAKACAWVEL 236

Query: 227 RLETGRTHQIRVHMAYLQHPLLGDTAYGGRARIPKGATEELTEMIRDFDRQALHAVMLKF 286
              TGRTHQ+RVH   +  P+LGD  YGG      GA  E TE+ +   R  LHA  L  
Sbjct: 237 HPRTGRTHQLRVHCLEMGTPILGDGKYGG-----PGAFLEGTELPK---RMHLHARALAL 288

Query: 287 EHPVTGEELEFHAPVPDDMVE 307
            HP  G  LE  AP P   VE
Sbjct: 289 PHP-AGGVLEIIAPPPPHFVE 308