Pairwise Alignments

Query, 324 a.a., ribosomal large subunit pseudouridine synthase D from Vibrio cholerae E7946 ATCC 55056

Subject, 343 a.a., Pseudouridine synthase, RluD (NCBI) from Rhodospirillum rubrum S1H

 Score =  224 bits (571), Expect = 2e-63
 Identities = 137/311 (44%), Positives = 180/311 (57%), Gaps = 8/311 (2%)

Query: 2   AHQIELTQTVKDSQLGQRLDQAVAELFTDFSRSRLKEWLLEGKIAVNGDVITKPRTKVMG 61
           A  I   + V     GQRLD+ +A +    SR+RL++ + E +++VNG  I +   +V  
Sbjct: 20  AAPIVYERAVDAEAAGQRLDKWLATVIPTLSRARLQQLIGEKRVSVNGQTIGEGSRRVKP 79

Query: 62  GEVITVQAELEDEQRWEAQDLPLNIVYEDDDIIVINKPRDFVVHPGAGQADKTVLNALLF 121
           G+ + V+         + + + L +VYEDDD+IVI+K    VVHPG G  D T++NALL 
Sbjct: 80  GQTVRVEEPPPIAATPQPEAIALTVVYEDDDLIVIDKAAGMVVHPGPGNPDHTLVNALLA 139

Query: 122 HYSP----IAEVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVRALQKRDVTREYEAIVIG 177
           H  P    I    R GIVHRLDKDT+GLM+ AKT  A   L        +TREY  +V G
Sbjct: 140 HCGPSLSGIGGERRPGIVHRLDKDTSGLMIAAKTDLAHHGLAEQFACHSLTREYLCLVWG 199

Query: 178 -TMTAGGMIDKPIGRHSTKRTLMS-VSPMGKHAVTHYRVAEHFREHTRL-RLRLETGRTH 234
               A G ID P+GRH T+R  M+ VS  GK A+THYRV         + +  L TGRTH
Sbjct: 200 RPRPAAGSIDAPLGRHPTQRKKMAVVSRGGKRALTHYRVVGDVEGIASIVKCTLSTGRTH 259

Query: 235 QIRVHMAYLQHPLLGDTAYGGRARIPKGATEELTEMIRDFDRQALHAVMLKFEHPVTGEE 294
           Q+RVHMA++ HPLLGD  YG R  IPK    +L+E I    RQALH+  L F HP TGE 
Sbjct: 260 QVRVHMAHIGHPLLGDAVYGHR-NIPKKLPGDLSERIARLTRQALHSFHLGFLHPRTGES 318

Query: 295 LEFHAPVPDDM 305
           LEF + +P D+
Sbjct: 319 LEFLSELPLDI 329