Pairwise Alignments

Query, 324 a.a., ribosomal large subunit pseudouridine synthase D from Vibrio cholerae E7946 ATCC 55056

Subject, 359 a.a., RluA family pseudouridine synthase from Parabacteroides merdae CL09T00C40

 Score =  187 bits (475), Expect = 3e-52
 Identities = 122/307 (39%), Positives = 168/307 (54%), Gaps = 22/307 (7%)

Query: 19  RLDQAVAELFTDFSRSRLKEWLLEGKIAVNGDVITKPRTKVMGGEVITVQAELEDEQRWE 78
           R+D+ + +     +R+R++     G I  NG  + K   +V   +V+T+       + +E
Sbjct: 45  RVDKFLVDRMFGATRNRIQSAADAGCIMANGKPV-KSNYRVKPEDVVTIMMT-RPPRTFE 102

Query: 79  A--QDLPLNIVYEDDDIIVINKPRDFVVHPGAGQADKTVLNALLFH------YSPIAEVP 130
              +++P+ IVYEDDD++V++KP   VVHPG G    T++NAL ++      Y P    P
Sbjct: 103 ILPENIPIKIVYEDDDLLVVDKPAGLVVHPGHGNYTGTLVNALAWYLKDDPTYDP--NDP 160

Query: 131 RAGIVHRLDKDTTGLMVVAKTVPAQTRLVRALQKRDVTREYEAIVIGTMTAG-GMIDKPI 189
             G+VHR+DKDT+GL+VVAK   A+  L      +   REY A+V G +    G I+  I
Sbjct: 161 ALGLVHRIDKDTSGLLVVAKKPEAKAHLSMQFFHKTTKREYRALVWGIVREDEGRIEGNI 220

Query: 190 GRHSTKRTLMSVSP---MGKHAVTHYRVAEHFREHTRLRLRLETGRTHQIRVHMAYLQHP 246
           GR+   R  M+V P    GK AVTHY V E     T ++ RLETGRTHQIRVHM Y+ H 
Sbjct: 221 GRNPRDRMQMTVFPEGDQGKTAVTHYSVLERLGYVTLVKCRLETGRTHQIRVHMKYIGHT 280

Query: 247 LLGDTAYGGRARIPKGATEELTEMIRD-----FDRQALHAVMLKFEHPVTGEELEFHAPV 301
           L  D  YGG   I KG T    +   D       RQALHA  L F HP TGEE+ F + +
Sbjct: 281 LFNDERYGGN-EILKGTTSSKYKQFVDNCFAICPRQALHAKTLGFVHPTTGEEMFFDSEI 339

Query: 302 PDDMVEM 308
           P DM  +
Sbjct: 340 PADMTAL 346