Pairwise Alignments

Query, 324 a.a., ribosomal large subunit pseudouridine synthase D from Vibrio cholerae E7946 ATCC 55056

Subject, 344 a.a., ribosomal large subunit pseudouridine synthase D from Phaeobacter inhibens DSM 17395

 Score =  210 bits (534), Expect = 5e-59
 Identities = 131/320 (40%), Positives = 180/320 (56%), Gaps = 29/320 (9%)

Query: 18  QRLDQAVAELFTD---FSRSRLKEWLLEGKIAVNGDVITKPRTKVMGGEVITVQAELEDE 74
           +RLD+AV+    +    SR+RL   +  G++ VNG V++  + KV  G +I +  E  ++
Sbjct: 16  KRLDKAVSRDVPEEATLSRTRLARLIEAGQLQVNGTVVSDAKAKVDEGALIEITIEEAED 75

Query: 75  QRWEAQDLPLNIVYEDDDIIVINKPRDFVVHPGAGQADKTVLNALLFH----YSPIAEVP 130
                +D+PL ++YEDDD+IVINKP   VVHP  G    T++NALL H     S +  V 
Sbjct: 76  SHIGPEDIPLEVIYEDDDLIVINKPTGMVVHPAPGTPSGTLVNALLHHCGDNLSGVGGVK 135

Query: 131 RAGIVHRLDKDTTGLMVVAKTVPAQTRLVRALQKRDVTREYEAI--------------VI 176
           R GIVHR+DK+T+GL+VVAK+  A   L    +K  V R Y AI              V 
Sbjct: 136 RPGIVHRIDKETSGLLVVAKSDVAHQGLAAQFEKHTVERYYRAICYGVPDANDPRLRGVK 195

Query: 177 GTMTAGGMIDK---PIGRHSTKRTLMSV-SPMGKHAVTHYRVAEHFREHTRLRL---RLE 229
           GT    G I K    + RH T R   +V    G+HA+T  R+ + F     + L    LE
Sbjct: 196 GTSFEPGNILKLTTQLARHKTDRQRQAVLFQGGRHAITRARIVDSFGTPPVVALIECWLE 255

Query: 230 TGRTHQIRVHMAYLQHPLLGDTAYGGRARI-PKGATEELTEMIRDFDRQALHAVMLKFEH 288
           TGRTHQIRVHMA+  H L+GD  YGG+ ++  K   E+    I+ F RQALHA +L F H
Sbjct: 256 TGRTHQIRVHMAHGGHGLVGDPVYGGKRKLAAKSLPEDTAAAIQAFPRQALHAAVLGFIH 315

Query: 289 PVTGEELEFHAPVPDDMVEM 308
           PVTG+ + F AP+P+DM  +
Sbjct: 316 PVTGDAMRFEAPLPEDMAHL 335