Pairwise Alignments

Query, 324 a.a., ribosomal large subunit pseudouridine synthase D from Vibrio cholerae E7946 ATCC 55056

Subject, 217 a.a., ribosomal large subunit pseudouridine synthase A from Phaeobacter inhibens DSM 17395

 Score =  118 bits (296), Expect = 1e-31
 Identities = 81/223 (36%), Positives = 114/223 (51%), Gaps = 22/223 (9%)

Query: 83  PLNIVYEDDDIIVINKPRDFVVHPGAGQADKTVLNALLFHYSPIAEVPRAGIVHRLDKDT 142
           PL+I++ D  ++V+NKP   +  PG G+    + + LL      A  P A +VHRLD+DT
Sbjct: 13  PLDILHHDAQLLVVNKPHGLLSVPGRGEH---LADCLLSRLQ--AAFPEALLVHRLDRDT 67

Query: 143 TGLMVVAKTVPAQTRLVRALQKRDVTREYEAIVIGTMTA-GGMIDKPIGRHSTKRTLMSV 201
           +G+MV   T  AQ  L    +KR   + Y A + G +    G +D P+      R    V
Sbjct: 68  SGVMVFGVTPHAQRHLSMQFEKRSAKKAYVARLDGRLEPRSGTVDLPLIVDWPNRPRQMV 127

Query: 202 S-PMGKHAVTHYRVAEHFREHTRLRLRLETGRTHQIRVHMAYLQHPLLGDTAYG-GRARI 259
               GK AVT +RV ++    TR+RL  +TGR+HQ+RVHM  L H +LGD  Y  GRA  
Sbjct: 128 CHDTGKEAVTDWRVMKYEDTATRVRLTPKTGRSHQLRVHMLSLGHAILGDPLYAEGRA-- 185

Query: 260 PKGATEELTEMIRDFDRQALHAVMLKFEHPVTGEELEFHAPVP 302
                        D  R  LHA  L+ +HP +GE ++F    P
Sbjct: 186 ------------LDHPRMMLHAEELRIKHPDSGESMKFRVKAP 216