Pairwise Alignments

Query, 324 a.a., ribosomal large subunit pseudouridine synthase D from Vibrio cholerae E7946 ATCC 55056

Subject, 323 a.a., RluA family pseudouridine synthase (RefSeq) from Shewanella loihica PV-4

 Score =  390 bits (1002), Expect = e-113
 Identities = 200/322 (62%), Positives = 242/322 (75%)

Query: 1   MAHQIELTQTVKDSQLGQRLDQAVAELFTDFSRSRLKEWLLEGKIAVNGDVITKPRTKVM 60
           M  +I L   +  +Q GQRLDQ +AELF D+SR+R+KEW+  G + V+G V TKPR KV+
Sbjct: 1   MTQEINLKSEITATQTGQRLDQTLAELFPDYSRTRIKEWIQAGAVYVDGMVQTKPREKVL 60

Query: 61  GGEVITVQAELEDEQRWEAQDLPLNIVYEDDDIIVINKPRDFVVHPGAGQADKTVLNALL 120
            G+ I ++A L++E + EAQ + L+IVYEDD IIVINK    VVHPGAG +D T++NALL
Sbjct: 61  EGQEIEIEATLKEEIKAEAQAIDLDIVYEDDHIIVINKQAGLVVHPGAGNSDGTLMNALL 120

Query: 121 FHYSPIAEVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVRALQKRDVTREYEAIVIGTMT 180
            H   I  VPRAGIVHRLDKDTTGLMVVAKTV AQT LV ALQ R++TREYEAIV GTMT
Sbjct: 121 HHCPEIELVPRAGIVHRLDKDTTGLMVVAKTVEAQTHLVAALQAREITREYEAIVSGTMT 180

Query: 181 AGGMIDKPIGRHSTKRTLMSVSPMGKHAVTHYRVAEHFREHTRLRLRLETGRTHQIRVHM 240
           AGG++D+PI RH TKRT M+V   G+ +VTHYRVAE FR HTRLRLRLETGRTHQIRVHM
Sbjct: 181 AGGVVDEPIARHPTKRTHMAVHHSGRPSVTHYRVAEKFRAHTRLRLRLETGRTHQIRVHM 240

Query: 241 AYLQHPLLGDTAYGGRARIPKGATEELTEMIRDFDRQALHAVMLKFEHPVTGEELEFHAP 300
           A++ H L+GD  YGGR R PK AT EL E +  F RQALHAV L+  HP T E + + AP
Sbjct: 241 AHIGHILVGDPVYGGRPRPPKKATPELMEALNGFKRQALHAVRLELAHPFTCEIMSWQAP 300

Query: 301 VPDDMVEMTLALREDAKLNRTE 322
           +P+DMV +T ALR+D K +  E
Sbjct: 301 IPEDMVALTRALRDDTKAHPVE 322