Pairwise Alignments

Query, 324 a.a., ribosomal large subunit pseudouridine synthase D from Vibrio cholerae E7946 ATCC 55056

Subject, 329 a.a., RluA family pseudouridine synthase (RefSeq) from Shewanella loihica PV-4

 Score =  121 bits (303), Expect = 3e-32
 Identities = 96/316 (30%), Positives = 159/316 (50%), Gaps = 35/316 (11%)

Query: 3   HQIELTQTVKDSQLGQRLDQAVAELFTDFSRSRLKEWLLEGKIAVNGDVITKPRTKVMGG 62
           +++EL  T+ +  LGQR+D  +        +S +   + +G++ VN   I KP  K+  G
Sbjct: 18  NKVELV-TIDEDNLGQRIDNFLVTKLKGVPKSMIYRIVRKGEVRVNKKRI-KPEYKLQDG 75

Query: 63  EVITVQ----AELEDEQRWEAQ-----DLPLNIVYEDDDIIVINKPRDFVVHPGAGQADK 113
           +++ +     +  ED+    A+      L   I++ED  IIV+NKP    VH G+G  D 
Sbjct: 76  DIVRIPPVRVSASEDKPGPSAKLTKVSQLEGRILFEDKAIIVLNKPAGIAVHGGSG-VDF 134

Query: 114 TVLNALLFHYSPIAEVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVRALQKRDVTREYEA 173
            V+ A+    S   +     +VHRLDK+T+G++++AK   A   L   L+ + + ++Y A
Sbjct: 135 GVIEAMR---SLRPQQKFLELVHRLDKETSGVLLIAKKRRALKHLHDQLRYKKMQKDYMA 191

Query: 174 IVIGTMTAGGMIDKPIGRHSTKRTLMS------VSPMGKHAVTHYRVAEHFREHTRLRLR 227
           +V G        DK I     K TL S      V+  GK + T +++ + ++  T ++  
Sbjct: 192 LVRGEWQNH---DKVINAPLLKLTLKSGERIVRVNQEGKPSETRFKIMQRYQGATLVQAS 248

Query: 228 LETGRTHQIRVHMAYLQHPLLGDTAYGGRARIPKGATEELTEMIRD--FDRQALHAVMLK 285
             TGRTHQIRVH  Y  HP+  D  Y         + ++  + +R+   +R  LHA  LK
Sbjct: 249 PVTGRTHQIRVHCQYAGHPIACDEKY---------SEQKFDDAMRELGLNRLFLHAAQLK 299

Query: 286 FEHPVTGEELEFHAPV 301
           F HPV+ E ++  AP+
Sbjct: 300 FTHPVSEEVMQVKAPL 315