Pairwise Alignments

Query, 324 a.a., ribosomal large subunit pseudouridine synthase D from Vibrio cholerae E7946 ATCC 55056

Subject, 298 a.a., RluA family pseudouridine synthase from Methanococcus maripaludis JJ

 Score =  159 bits (403), Expect = 6e-44
 Identities = 105/311 (33%), Positives = 176/311 (56%), Gaps = 23/311 (7%)

Query: 7   LTQTVKDSQLGQRLDQAVAELFTDFSRSRLKEWLLEGKIAVNGDVITKPRTKVMGGEVIT 66
           L  TV    +G +L   + + F + S   +K++  E KI VN   I+  ++K+   E + 
Sbjct: 8   LKLTVDSKIVGNKLIDVLKDNF-ELSNKMIKKFDKENKIFVNSKNISL-KSKLKENETVY 65

Query: 67  VQAELEDEQRWEAQDLPLNIVYEDDDIIVINKPRDFVVHPGAGQADKTVLNALLFHYSPI 126
           V+ +       + ++L LNI+YEDDD+++++KP++ VVHP      KT+ NA+  H    
Sbjct: 66  VEIDC-GINTIDPENLALNIIYEDDDLLIVDKPKNMVVHPTKNVLSKTLANAVSNHQKIN 124

Query: 127 AEVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVRALQKRDVTREYEAIVIGTM-TAGGMI 185
            +  +   V+RLD DTTGL+++AK   +  RL + + +  + + Y A+V G +    G+I
Sbjct: 125 NQNYKIRFVNRLDMDTTGLLIIAKDPYSHQRLAKQMDEGILEKIYIAVVNGHLDLKEGII 184

Query: 186 DKPIGRH--STKRTLMSVSPMGKHAVTHYRVAEHFREHTRLRLRLETGRTHQIRVHMAYL 243
           +  I  +    KR L +V   GK + T Y+V E  +  + L ++L TGRTHQIRVH++  
Sbjct: 185 EDSIDLNDDGIKRELSNV---GKISKTKYKVIEELKNASILEIKLLTGRTHQIRVHLSST 241

Query: 244 QHPLLGDTAYGGRARIPKGATEELTEMIRDFDRQALHAVMLKFEHPVTGEELEFHAPVPD 303
            + ++GDT YG           E++ +I   +RQALH+ +L+F HP+T E++EF + +PD
Sbjct: 242 GNYIIGDTLYG-----------EISNLI---ERQALHSYILRFIHPITKEKMEFSSKLPD 287

Query: 304 DMVEMTLALRE 314
           DM  +   L+E
Sbjct: 288 DMENLIKNLKE 298