Pairwise Alignments

Query, 324 a.a., ribosomal large subunit pseudouridine synthase D from Vibrio cholerae E7946 ATCC 55056

Subject, 352 a.a., pseudouridine synthase, RluA family from Marinobacter adhaerens HP15

 Score =  117 bits (292), Expect = 5e-31
 Identities = 88/306 (28%), Positives = 147/306 (48%), Gaps = 26/306 (8%)

Query: 10  TVKDSQLGQRLDQAVAELFTDFSRSRLKEWLLEGKIAVNGDVITKPRTKVMGGEVITVQA 69
           TV +   GQR+D  +        +S +   + +G++ VN   + KP ++V  G+ + +  
Sbjct: 43  TVDEDNEGQRVDNFLLAQLRGVPKSIIYRVIRKGEVRVNKGRV-KPDSRVRTGDQVRIPP 101

Query: 70  ELEDEQRWEAQD-------LPLNIVYEDDDIIVINKPRDFVVHPGAGQADKTVLNALLFH 122
               E+  +          +   +V+E++ ++V+NKP    VH G+G +   +   +L  
Sbjct: 102 ITRKEKPDQVAPGSRVQGVMESAVVFENEQMLVVNKPSGIAVHGGSGLSFGLI--EVLRS 159

Query: 123 YSPIAEVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVRALQKRDVTREYEAIVIGTMTAG 182
             P A+     +VHRLD+DT+GL++VAK   A   L   L+++ + + Y A+V G   A 
Sbjct: 160 ARPTAKFLE--LVHRLDRDTSGLIMVAKKRSALRYLQDELRQKRIRKHYHALVAGDWPAS 217

Query: 183 -GMIDKPIGRHSTKR--TLMSVSPMGKHAVTHYRVAEHFREHTRLRLRLETGRTHQIRVH 239
              +D P+ R+        + V   GK ++T +R  EH+  ++ +     TGRTHQIRVH
Sbjct: 218 VDRVDVPLLRYEMPNGERRVKVDAAGKASLTTFRCLEHYAGYSLVEASPITGRTHQIRVH 277

Query: 240 MAYLQHPLLGDTAYGGRARIPKGATEELTEMIRDF--DRQALHAVMLKFEHPVTGEELEF 297
            A+  HP+ GD  Y           +   +  R     R  LHA  L+F  PV+GE +  
Sbjct: 278 SAWAGHPIAGDDKY---------MDDVSLKAFRSIGGQRLMLHARALEFTLPVSGEAMRL 328

Query: 298 HAPVPD 303
            AP  D
Sbjct: 329 EAPYDD 334