Pairwise Alignments

Query, 324 a.a., ribosomal large subunit pseudouridine synthase D from Vibrio cholerae E7946 ATCC 55056

Subject, 228 a.a., RNA pseudouridine synthase from Klebsiella michiganensis M5al

 Score =  118 bits (296), Expect = 1e-31
 Identities = 77/224 (34%), Positives = 117/224 (52%), Gaps = 22/224 (9%)

Query: 84  LNIVYEDDDIIVINKPRDFVVHPGAGQADKTVLNALLFHYSPIAEVPRAGIVHRLDKDTT 143
           ++I+Y+D+ +++I+KP   +   G     K   N    HY  + + P   + HRLD  T+
Sbjct: 17  IDILYQDEHLLLIDKPAGLLSLSG-----KNPRNLDSVHYRLVQQFPGCALAHRLDFGTS 71

Query: 144 GLMVVAKTVPAQTRLVRALQKRDVTREYEAIVIGTMTAG-GMIDKPIGRHSTKRTLMSVS 202
           GLMV+A+       L +   +R V++ Y A++ G +    G ID PI +      LM++ 
Sbjct: 72  GLMVIARNKVINAALCQQFSQRAVSKVYSALLCGHLADDEGTIDAPIAKDPALFPLMTIC 131

Query: 203 PM-GKHAVTHYRVAEHFREH-----TRLRLRLETGRTHQIRVHMAYLQHPLLGDTAYGGR 256
           P  GK A + YRV E  R       TR++L  ETGRTHQ+R+H   L HP+LG   YGG 
Sbjct: 132 PRRGKPARSGYRVVERLRYQDSVPVTRVQLTPETGRTHQLRIHCQQLGHPILGCDLYGG- 190

Query: 257 ARIPKGATEELTEMIRDFDRQALHAVMLKFEHPVTGEELEFHAP 300
             +    TE+   ++       LHA  L F HPV+GE ++  +P
Sbjct: 191 --LLLPGTEQAPRLM-------LHASELHFMHPVSGERIDAISP 225