Pairwise Alignments

Query, 324 a.a., ribosomal large subunit pseudouridine synthase D from Vibrio cholerae E7946 ATCC 55056

Subject, 331 a.a., 23S rRNA pseudouridine(955/2504/2580) synthase from Klebsiella michiganensis M5al

 Score =  130 bits (326), Expect = 6e-35
 Identities = 100/320 (31%), Positives = 157/320 (49%), Gaps = 28/320 (8%)

Query: 11  VKDSQLGQRLDQAVAELFTDFSRSRLKEWLLEGKIAVNGDVITKPRTKVMGGEVITVQAE 70
           + D + GQR+D  +        +S +   L +G++ VN   + KP  K+  G+ + +   
Sbjct: 27  IADDEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRV-KPEYKLEAGDEVRIPPV 85

Query: 71  LEDEQRWEAQDLPLN--------IVYEDDDIIVINKPRDFVVHPGAGQADKTV--LNALL 120
              E+  EA    L         I+YEDD I+V+NKP    VH G+G +   +  L AL 
Sbjct: 86  RVSEKEEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALR 145

Query: 121 FHYSPIAEVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVRALQKRDVTREYEAIVIGTMT 180
                  E     +VHRLD+DT+G+++VAK   A   L   L+ + + ++Y A+V G   
Sbjct: 146 ------PEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLRDKGMQKDYLALVRGQWQ 199

Query: 181 AGG-MIDKPIGRH--STKRTLMSVSPMGKHAVTHYRVAEHFREHTRLRLRLETGRTHQIR 237
           +   ++  P+ ++   +   ++ V+  GK + T ++V E F   T +R    TGRTHQIR
Sbjct: 200 SHTKVVQAPLLKNILQSGERIVRVNQEGKPSETRFKVEERFTHATLVRCSPVTGRTHQIR 259

Query: 238 VHMAYLQHPLLGDTAYGGRARIPKGATEELTEMIRDFDRQALHAVMLKFEHPVTGEELEF 297
           VH  Y  HP+  D  YG R    + A   L       +R  LHA  LKF HP +GE +  
Sbjct: 260 VHTQYAGHPIAFDDRYGDREFDKQLAGTGL-------NRLFLHAAALKFTHPGSGEIMRV 312

Query: 298 HAPVPDDMVEMTLALREDAK 317
            AP+ D+ ++  L +   AK
Sbjct: 313 EAPL-DNQLKRCLQVLRSAK 331