Pairwise Alignments

Query, 324 a.a., ribosomal large subunit pseudouridine synthase D from Vibrio cholerae E7946 ATCC 55056

Subject, 227 a.a., Dual-specificity RNA pseudouridine synthase RluA from Enterobacter sp. TBS_079

 Score =  112 bits (280), Expect = 8e-30
 Identities = 77/225 (34%), Positives = 115/225 (51%), Gaps = 21/225 (9%)

Query: 84  LNIVYEDDDIIVINKPRDFVVHPGAGQADKTVLNALLFHYSPIAEVPRAGIVHRLDKDTT 143
           + I+++D+ +++INKP   +   G     K   N    HY  +   P   +VHRLD  T+
Sbjct: 17  IEILWQDEHLVLINKPSGLLSLSG-----KNPRNRDSVHYRLVQTFPGCTLVHRLDFGTS 71

Query: 144 GLMVVAKTVPAQTRLVRALQKRDVTREYEAIVIGTMTAG-GMIDKPIGRHSTKRTLMSVS 202
           GLMV+A+       L     +R V + Y A++ G +    G+ID PI +      LMS+ 
Sbjct: 72  GLMVIARNKAINAALCHQFSQRAVRKVYSALLCGHVENDEGVIDAPIAKDPALFPLMSIC 131

Query: 203 PM-GKHAVTHYRVAEHFREH----TRLRLRLETGRTHQIRVHMAYLQHPLLGDTAYGGRA 257
            + GK A + Y+V + F +     TR+RL  ETGRTHQ+R+H   L +P+LG   YGG A
Sbjct: 132 AITGKPARSRYQVVDRFYDAELPLTRVRLTPETGRTHQLRIHCQQLGYPILGCDLYGGLA 191

Query: 258 RIPKGATEELTEMIRDFDRQALHAVMLKFEHPVTGEELEFHAPVP 302
            +P   TE +  ++       LHA  L F HPV+ E +      P
Sbjct: 192 -LP--GTEPIPRLM-------LHASELDFVHPVSAEAINARHAAP 226