Pairwise Alignments

Query, 324 a.a., ribosomal large subunit pseudouridine synthase D from Vibrio cholerae E7946 ATCC 55056

Subject, 306 a.a., Ribosomal large subunit pseudouridine synthase C from Enterobacter sp. TBS_079

 Score =  124 bits (312), Expect = 2e-33
 Identities = 96/316 (30%), Positives = 154/316 (48%), Gaps = 27/316 (8%)

Query: 11  VKDSQLGQRLDQAVAELFTDFSRSRLKEWLLEGKIAVNGDVITKPRTKVMGGEVITVQ-- 68
           + +   GQR+D  +        +S +   L +G++ VN   + KP  K+  G+ + +   
Sbjct: 4   IAEDDAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRV-KPEYKLEAGDEVRIPPV 62

Query: 69  --AELEDE----QRWEAQDLPLNIVYEDDDIIVINKPRDFVVHPGAGQADKTV--LNALL 120
             AE E+E    +  +   L   I+YEDD I+V+NKP    VH G+G +   +  L AL 
Sbjct: 63  RVAEREEEVVSPRLQKVAALSDVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALR 122

Query: 121 FHYSPIAEVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVRALQKRDVTREYEAIVIGTMT 180
                  E     +VHRLD+DT+G+++VAK   A   L   L+++ + ++Y A+V G   
Sbjct: 123 ------PEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGHWQ 176

Query: 181 AG-GMIDKPIGRH--STKRTLMSVSPMGKHAVTHYRVAEHFREHTRLRLRLETGRTHQIR 237
           +    +  P+ ++   +   ++ V+  GK + T ++V E +   T +R    TGRTHQIR
Sbjct: 177 SHVKAVQAPLLKNILQSGERIVRVNQEGKPSETRFKVEERYAFATLVRCSPVTGRTHQIR 236

Query: 238 VHMAYLQHPLLGDTAYGGRARIPKGATEELTEMIRDFDRQALHAVMLKFEHPVTGEELEF 297
           VH  Y  HP+  D  YG R    + A   L+ +        LHA  L F HP TGE +  
Sbjct: 237 VHTQYAGHPIAFDDRYGDREFDKQLAGTGLSRLF-------LHAAALTFTHPNTGETIRI 289

Query: 298 HAPVPDDMVEMTLALR 313
            AP+ + +      LR
Sbjct: 290 EAPLDEQLKRCLKVLR 305