Pairwise Alignments

Query, 324 a.a., ribosomal large subunit pseudouridine synthase D from Vibrio cholerae E7946 ATCC 55056

Subject, 541 a.a., ribosomal large subunit pseudouridine synthase D/dephospho-CoA kinase (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  184 bits (467), Expect = 4e-51
 Identities = 115/315 (36%), Positives = 175/315 (55%), Gaps = 14/315 (4%)

Query: 2   AHQIELTQTVKDSQLGQRLDQAVAELFTDFSRSRLKEWLLEGKIAVNGDVITKPRTKVMG 61
           AH + +   +++ +L + L +A++   TD SR ++K  + +G+  V+G V T P T++  
Sbjct: 14  AHSLTVPAGMRNERLDRFLGEALSH--TDLSREKIKRAIRDGQCTVDGTVCTTPSTRLRS 71

Query: 62  GEVITVQAELEDEQRWEAQDLPLNIVYEDDDIIVINKPRDFVVHPGAGQADKTVLNALLF 121
           G+ + + A        E ++  L I++ D+ ++VI+KP    VHP     + T+++ L+ 
Sbjct: 72  GQRVEL-AIAPAATAVEPEEGDLTIIHRDEHLLVIDKPAGLTVHPCPSCPEGTLVHRLVH 130

Query: 122 HYSPIA--EVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVRALQKRDVTREYEAIVIGTM 179
           H+  +   E  R GIVHR+DKDT+GL++VA +   + +L  A  +R V +EY A+V G  
Sbjct: 131 HFDALRAQEGFRPGIVHRIDKDTSGLLLVALSEGVRLKLSEAFAERTVEKEYLALVHGVP 190

Query: 180 TAGGMIDKPIGRHSTKRTLMSVSPMGKHAVTHYRVAEHFRE--HTRLRLRLETGRTHQIR 237
            A G +D PIGRH T +  M+V   GK A + +RV     E  +  + +R+ +GRTHQIR
Sbjct: 191 PATGEVDAPIGRHPTHKVRMAVVKGGKPARSEWRVLHAAPEGHYALVAVRIHSGRTHQIR 250

Query: 238 VHMAYLQHPLLGDTAYGGRARIPKGATEELTEMIRDFDRQALHAVMLKFEHPVTGEELEF 297
           VHMA+   PL GD  YG       G    L E      RQ LHA  L F HPVTGE L F
Sbjct: 251 VHMAHAGFPLWGDQLYG------PGTPARLREQGYG-ARQMLHAWHLAFTHPVTGERLRF 303

Query: 298 HAPVPDDMVEMTLAL 312
             P P D  ++ +AL
Sbjct: 304 TCPPPQDFPDLAIAL 318